F24136

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24136

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24136

Determination of introduced cDNA(s)

  • RAFL05-02-M09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-02-M09 - Resource: pda00699

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-02-M09 - full reading 
    TGGAGCTTCA TTTTGCCTTT GTATACTTTT GAGTAGATAG ATAGACAGAC 
    TATAGTCTAT ATAAGATCCA TGTGACAATA GTTAAAATCC TCATATTTTC 
    ATTTCCAATG GAGCGCAAAG TCTTGAATAC CCTCGCCTTC TCCGTCTTTG 
    CCGTTCTCTT CTTCACCTCC TCTGCTTCTT CCCAATACCA AACTCTTGTC 
    GTCAACACTC TTCCTTCTTC CGCAACACTC TCATGGCCCG AGTCCGAATC 
    TTTAACTGAT GAATCTTTAT CCGAGTCCAC AACTTCACTC TCTGTCCATT 
    TATCACACGT GGATGCTCTG TCTTCCTTCT CCGACGCATC TCCGGCGGAC 
    CTCTTCAACC TCCGTCTCCA ACGAGACTCT CTCCGCGTCA AATCTATTAC 
    CAGCCTCGCC GCCGTATCAA CCGGACGAAA TGCTACGAAA AGAACTCCAC 
    GTACCGCCGG TGGATTTAGC GGCGCAGTTA TCTCTGGCCT CTCACAAGGA 
    AGCGGAGAGT ATTTTATGAG GTTAGGTGTT GGAACTCCGG CGACTAACGT 
    TTACATGGTG CTCGACACAG GAAGCGACGT CGTTTGGCTC CAATGCTCTC 
    CTTGCAAAGC CTGTTACAAC CAGACCGACG CCATTTTTGA CCCGAAGAAA 
    TCCAAAACTT TCGCCACCGT ACCATGTGGA TCTCGCCTTT GCCGGAGACT 
    AGACGACTCG TCGGAATGTG TCACTCGTCG AAGCAAGACT TGTCTCTACC 
    AAGTATCGTA CGGTGACGGA TCATTCACCG AAGGAGATTT CTCAACTGAA 
    ACGCTGACGT TTCATGGAGC GCGTGTTGAT CACGTGCCGT TAGGATGCGG 
    TCACGATAAC GAAGGCTTGT TCGTTGGTGC GGCTGGGCTT TTGGGCTTGG 
    GCCGTGGTGG GTTATCTTTC CCGTCGCAGA CGAAAAACCG TTATAACGGA 
    AAATTCTCTT ACTGTTTGGT TGACCGGACG AGTTCCGGTT CTTCTTCTAA 
    ACCACCGTCA ACAATCGTGT TTGGAAACGC CGCCGTTCCG AAAACCTCTG 
    TTTTCACGCC GTTACTAACG AACCCGAAAC TCGACACGTT TTATTACTGC 
    AGCTTCTTGG AATCAGCGTT GGTGGTTCGC GCGTTCCCGG CGTTTCGGAG 
    TCGCAGTTCA AGCTTGACGC CACCGGAAAC GGCGGTGTCA TTATAGATTC 
    CGGTACTTCG GTTACTCGGC TGACGCAACC TGCTTACGTA GCGCTTAGAG 
    ACGCTTTTAG ACTTGGTGCT ACGAAGCTGA AACGTGCTCC ATCGTATTCT 
    TTGTTCGACA CGTGTTTTGA TCTCTCGGGA ATGACGACTG TGAAGGTTCC 
    GACGGTTGTG TTTCATTTCG GAGGCGGAGA GGTTTCGCTT CCGGCGAGTA 
    ATTATCTGAT CCCGGTTAAC ACTGAAGGAC GGTTCTGTTT TGCGTTTGCC 
    GGAACTATGG GGAGTTTGTC AATCATTGGA AACATACAGC AACAAGGTTT 
    CCGGGTCGCT TATGACTTGG TCGGGTCACG GGTCGGGTTT TTGTCTCGCG 
    CGTGTTAGAT TTTGAGCTTG AGTTGACTGA TTTATTCCCA AAGACTTTTT 
    GGGAGAAAAT TGACAAAGCA AATTATCAAA CATTGTTATC ATCATCGACT 
    ATCATACTAC TCATTAGTCA TCATTCATGA AGATCCCTAG ATTAAATATT 
    GTACTAGTAC TTCTGTACTG TCAAAAGTCA AAGAGAAGTG AATCTTAAAG 
    GTGCTTTTGT CCTTTGAAAT TTCTTAAACC

    Gene models with high sequence identity

    1. AT3G61820.1 [+] show detail - Eukaryotic aspartyl protease family protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 5.4e-75
    HMMPanther Peptidase A1 5.4e-75
    HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 5.7e-51
    HMMPanther Peptidase A1 5.7e-51
    Gene3D Peptidase aspartic, catalytic 7.8e-39
    Gene3D Peptidase aspartic, catalytic 4.1e-32
    superfamily Peptidase aspartic 4.3e-38
    superfamily Peptidase aspartic 4.3e-55
    HMMPfam Peptidase A1 1.9e-07
    HMMPfam Peptidase A1 4.7e-13

    See the detailed result >

    AT3G61820.1

    Model type
    Protein coding
    Short Description
    Eukaryotic aspartyl protease family protein
    Computational Description
    Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G01300.1); Has 3770 Blast hits to 3746 proteins in 344 species: Archae - 0; Bacteria - 0; Metazoa - 956; Fungi - 705; Plants - 1946; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR