F24212

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24212

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24212

Determination of introduced cDNA(s)

  • RAFL09-41-P11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-41-P11 - Resource: pda09761

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-41-P11 - full reading
    ATAAAGAAGT AAAGCTTTGC CGGAGATTTA GCAAACACAA ACACAAAAAA 
    CAAAACCAAC TCAGACGAAT GTGATTTTTT CTTCTTGAGT GAATTGTTGT
    AAAAAAATGA TGATCGGAGA ATCTCATCGT GGTTTTAATC CAACGGTTCA
    TATTCCTCCA TGGCCACTTT CTGAAGATCT AACGGTGTCT GATATTTACG
    GAAGTCCAGA CGGAGGAAGT AGTATGATGG AAGCTTTGGC TGAGTTACAA
    CGTTATCTTC CGTCAAACGA ACCGGATCCG GATTCAGATC CGGATCTCTC
    GGGTCCGGAT TCACCAATCG ATGCTTATAC ATGCGATCAT TTTCGGATGT
    ATGAGTTTAA AGTGAGACGT TGTGCTCGTG GCCGGAGCCA TGATTGGACG
    GAGTGTCCTT ACGCTCATCC CGGAGAAAAA GCTCGCCGTC GTGATCCGAG
    GAAGTTTCAT TACTCCGGTA CGGCGTGTCC TGAGTTTCGT AAAGGTTGTT
    GCAAGAGAGG AGACGCATGT GAGTTTTCTC ATGGTGTTTT TGAGTGTTGG
    CTTCACCCGG CGCGTTACCG GACTCAGCCG TGTAAAGACG GTGGTAACTG
    TCGCCGTCGT GTTTGTTTCT TTGCTCATTC GCCGGATCAG ATTAGGGTTT
    TGCCTAATCA AAGCCCTGAT CGTGTTGATT CGTTCGACGT TTTGTCTCCT
    ACGATTCGTA GAGCGTTTCA GTTTTCGATT TCTCCGTCGT CTAACTCGCC
    GCCGGTGAGT CCACGAGGTG ACTCGGACTC GTCGTGTTCG TTACTGAGTC
    GTTCACTCGG GTCTAATCTG GGAAACGACG TCGTTGCGTC TCTCAGGAAT
    CTGCAACTTA ATAAAGTGAA GTCTTCTCTT TCGTCGTCAT ACAACAATCA
    AATCGGAGGA TACGGATCCG GATTCGGGTC GCCTCGTGGA TCGGTTTTGG
    GTCCTGGTTT CCGTAGCTTA CCAACTACAC CGACCCGACC TGGTTTTATG
    AACATTTGGG AGAATGGCTT GGAGGAAGAA CCGGCGATGG AACGGGTCGA
    GTCGGGTCGT GAACTGCGAG CGCAGCTGTT CGAGAAGCTG AGCAAAGAGA
    ATTGCATGGG TCGGATTGAA CCGGATCCGG ATCAGGGAGC GGGTGATACT
    CCTGATGTCG GGTGGGTCTC TGACTTGGTT ATGTGATTTG AACCGGATTC
    GTAAACCGGA GTGTCTGAAA TTTCTTTGAT AAAGATTAAT TAAAGGATTA
    TTATCGGCAT GGGAGGTTTT TTAATGGATC TCTTCTTAGG AAAAGAGGAG
    ATTTCTCTGC AAGTTTTTTT TTTGTATATT TATTATTTCC TAATTTCGTA
    TAATCTCTGT TCCATAATCG ATGATTCGAG GGAGATTCCT CAGTGTATAG
    GAGTTGCTTA GGATTTTTCA TTATGATGGA TTCACTAATA TTGATATTGT
    TGGTTATTGT TTTTTTTATA TATTATGATG TAAGATGCAA GTCGCAATGT
    AATTATTAAA TATCTTATGA ATGAAATGAG AATGTAAATT ATTTAT

    Gene models with high sequence identity

    1. AT2G19810.1 [+] show detail - CCCH-type zinc finger family protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, CCCH-type 6.484
    ProfileScan Zinc finger, CCCH-type 12.699
    ProfileScan Zinc finger, CCCH-type 6.568
    superfamily CCCH zinc finger 0.0031
    superfamily CCCH zinc finger 0.018
    HMMPanther UNCHARACTERIZED 0.00000035
    HMMSmart Zinc finger, CCCH-type 0.00012
    HMMSmart Zinc finger, CCCH-type 0.53

    See the detailed result >

    AT2G19810.1

    Model type
    Protein coding
    Short Description
    CCCH-type zinc finger family protein
    Computational Description
    CCCH-type zinc finger family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT4G29190.1); Has 721 Blast hits to 690 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 6; Plants - 412; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR