F24213

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24213

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24213

Determination of introduced cDNA(s)

  • RAFL05-05-O01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-05-O01 - Resource: pda01174

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-05-O01 - full reading 
    ATCAAATCCA TCTCCCACTC TTCTAGCATC TTGAAGCTTA AATCTCAGCC 
    GTCCGATCAT GCCGATCAGA AACATCGCCA TTGGCCGTCC AGATGAAGCC 
    ACCCGTCCCG ATGCCTTAAA GGCGGCGTTG GCTGAGTTCA TTTCAACTTT 
    GATCTTTGTC GTCGCCGGTT CAGGCTCTGG CATGGCTTTC AACAAGCTCA 
    CTGAAAACGG AGCCACCACT CCTTCTGGTC TCGTAGCTGC TGCAGTGGCT 
    CATGCCTTTG GACTCTTCGT CGCTGTCTCA GTTGGTGCCA ACATCTCTGG 
    TGGACACGTT AACCCTGCCG TCACTTTCGG TGCTTTCATT GGTGGTAACA 
    TCACTCTCCT CCGTGGTATC CTCTACTGGA TTGCTCAGCT TCTCGGCTCC 
    GTCGTCGCTT GCCTCATCCT TAAATTCGCC ACCGGTGGCT TGGCTGTGCC 
    GGCTTTTGGT CTCTCTGCTG GAGTAGGAGT GTTGAACGCT TTCGTTTTCG 
    AGATCGTGAT GACATTCGGG CTTGTTTACA CCGTCTACGC TACAGCCATT 
    GACCCCAAAA ACGGGAGTCT TGGAACAATT GCTCCCATCG CAATCGGTTT 
    CATTGTTGGA GCCAACATCT TAGCTGGAGG AGCTTTCTCT GGAGCCTCCA 
    TGAATCCCGC CGTGGCTTTC GGACCAGCGG TGGTGAGCTG GACATGGACC 
    AACCACTGGG TCTACTGGGC CGGACCTCTC GTCGGCGGTG GAATCGCTGG 
    ACTCATCTAC GAAGTTTTCT TCATCAACAC CACACACGAG CAGCTCCCAA 
    CCACAGACTA CTGAATTAAT CTCTCTTTTT CTCTCTTGTG TAATTTTATT 
    CGACTTTGAA TTTGAATTTT AATGTCTTTT TAATTTCCGT TTGTGTAATT 
    TCGAATCATC AAGGGGTTTA TGATCGTTCG ATCTTTTAGA TGAATCCTTG 
    TCCGTTGGTT TCAAGAGTGG CCATTGCAAT TTCGACTATA TAATGTGAAT 
    TATGTATCAA TCACAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT2G36830.1 [+] show detail - gamma tonoplast intrinsic protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Major intrinsic protein 3.3e-77
    HMMTigr Aquaporin 4.9e-68
    FPrintScan Major intrinsic protein 1.2e-50
    FPrintScan Major intrinsic protein 1.2e-50
    FPrintScan Major intrinsic protein 1.2e-50
    FPrintScan Major intrinsic protein 1.2e-50
    FPrintScan Major intrinsic protein 1.2e-50
    FPrintScan Major intrinsic protein 1.2e-50
    superfamily Major intrinsic protein 9e-64
    HMMPanther TONOPLAST INTRINSIC PROTEIN 2.6e-131
    HMMPanther Major intrinsic protein 2.6e-131
    PatternScan Major intrinsic protein, conserved site 0
    Gene3D Major intrinsic protein 4.9e-63

    See the detailed result >

    AT2G36830.1

    Model type
    Protein coding
    Short Description
    gamma tonoplast intrinsic protein
    Curator Summary
    Encodes a tonoplast intrinsic protein, which functions as water channel. It has also been shown to be able to facilitate the transport of urea and hydrogen peroxide. Highly expressed in vascular tissues of the root, stem, cauline leaves and flowers but not in the apical meristems.
    Computational Description
    gamma tonoplast intrinsic protein (GAMMA-TIP); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: tonoplast intrinsic protein 2 (TAIR:AT3G26520.1); Has 11016 Blast hits to 10983 proteins in 2213 species: Archae - 82; Bacteria - 5238; Metazoa - 1501; Fungi - 451; Plants - 2489; Viruses - 0; Other Eukaryotes - 1255 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR