F24214

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24214

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24214

Determination of introduced cDNA(s)

  • RAFL06-12-D24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-12-D24 - Resource: pda03101

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-12-D24 - full reading 
    AAAAAAAGAT CAAAACTTTG GAAGTTTTCC TGTGAAAATA ATCTATCCTT 
    TTTGCATCAT TTGCGTTTTG GTTGATGAAG AGGATCTGAA GAAGCTGAGA 
    TTTAGGAATG ATGATGGGTT TTGCTGTATC GGATGAATTG TTGGGTACTG 
    TTGCTCCGAT TGTGGTGTAC TGGTTGTATT CTGGGATTTA TGTAGCGCTC 
    TCCTCTTTAG AGAGTTATAG ATTGCATTCA AAGGTTGAAG AAGAAGAGAA 
    GAATCTTGTA TCGAAATCTT CTGTTGTGAA AGGTGTTCTT GTTCAACAGG 
    TTGTTCAAGC TGTTGTCGCT ATCCTTTTGT TCACGGTGAC GGGAAGTGAT 
    GCCGAAGCAG ACAAAGCGCA ACAGTTTTCC TTCTTGGTCC TAGCAAGACA 
    GTTTGTGACT GCCATGATAG TCCTCGACAC ATGGCAATAC TTCATGCATC 
    GATATATGCA TCAGAACAAG TTCTTATACA AACATATCCA CTCTCAACAC 
    CACCGTCTTA TCGTCCCTTA TGCATATGGA GCTTTATACA ACCATCCAGT 
    GGAAGGTCTT CTCTTGGATA CAATTGGAGG CGCCTTATCT TTCCTAGTCT 
    CTGGTATGTC TCCAAGAACT TCCATCTTCT TCTTCTCTTT CGCCACGATC 
    AAAACCGTGG ACGACCATTG CGGTCTCTGG CTACCTGGAA ACTTATTCCA 
    TATGGTCTTC AAGAACAACT CGGCTTACCA CGATATCCAT CATCAGCTCT 
    ATGGAACCAA ATACAATTTC TCTCAGCCTT TCTTTGTCAT GTGGGATCGG 
    ATTCTTGGAA CTTACATGCC TTACTCGCTT GAGAAAAGAG AAGATGGAGG 
    ATTCGAAGCT CGCCCGACTA AAGAATTCAA AGACGATTAA GATTTTGGAG 
    TTTGGATATA TGTTATGTAT CTGCCCTGAG GTTGGAGAAA TGGATGATAC 
    TTTGTGTTAT TGGAGGTGTA GTTTTAAAAT CAGAAACAGA ACTGGTTTTT 
    TTGCGTTTTG CGTTTCTTCT CAAGAGCGAA TTTAGCTTGG AGTTTGAGAT 
    TTGTATATAA ACATTATTGA GTTGTTGTTC TACTTTCGGT TTTTGTTTTG 
    CATGTAATAT TACTACAACA AACATGTTTT TTTTATAATC TATCCATCTA 
    CGAGGCCATT CTTGG

    Gene models with high sequence identity

    1. AT1G69640.1 [+] show detail - sphingoid base hydroxylase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SUR2 HYDROXYLASE/DESATURASE 3.3e-158
    HMMPanther STEROL DESATURASE 3.3e-158
    HMMPfam Fatty acid hydroxylase 3.6e-19

    See the detailed result >

    AT1G69640.1

    Model type
    Protein coding
    Short Description
    sphingoid base hydroxylase 1
    Curator Summary
    Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth.
    Computational Description
    sphingoid base hydroxylase 1 (SBH1); CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sphingoid base hydroxylase 2 (TAIR:AT1G14290.1); Has 2400 Blast hits to 2339 proteins in 395 species: Archae - 0; Bacteria - 406; Metazoa - 416; Fungi - 708; Plants - 429; Viruses - 3; Other Eukaryotes - 438 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR