F24226

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24226

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24226

Determination of introduced cDNA(s)

  • RAFL05-02-G21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-02-G21 - Resource: pda00842

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-02-G21 - full reading
    AAAAACTCAC CGACGCGATC CGATCTCATC TCTCTCATTT CGAAACCATG 
    GTTGAGCCGG CGAATACTGT TGGTCTTCCG GTGAACCCGA CTCCGTTGCT
    GAAAGATGAG CTCGATATCG TGATTCCGAC TATCAGAAAC CTCGATTTCC
    TCGAGATGTG GAGGCCTTTT CTTCAGCCTT ACCATCTGAT CATCGTCCAG
    GACGGAGATC CATCGAAGAA GATCCATGTC CCTGAAGGTT ACGACTACGA
    GCTCTACAAC AGGAACGACA TTAACCGAAT CCTCGGACCT AAGGCTTCTT
    GTATCTCGTT TAAGGATTCT GCTTGTCGAT GCTTTGGGTA CATGGTGTCT
    AAGAAGAAGT ATATCTTCAC CATTGATGAC GATTGCTTCG TTGCCAAGGA
    TCCATCAGGC AAAGCAGTGA ACGCTCTTGA GCAACACATC AAGAACCTTC
    TCTGCCCATC GTCTCCCTTT TTCTTCAACA CCTTGTATGA TCCTTACCGT
    GAAGGTGCTG ATTTCGTCCG TGGATACCCT TTCAGTCTCC GTGAAGGTGT
    TTCCACTGCT GTTTCCCATG GTCTTTGGCT CAACATCCCT GACTACGATG
    CCCCGACCCA ACTCGTGAAG CCTAAGGAGA GGAACACCAG GTATGTGGAT
    GCTGTCATGA CCATCCCAAA GGGAACACTT TTCCCAATGT GTGGTATGAA
    CTTGGCTTTT GACCGTGATT TGATTGGCCC GGCTATGTAC TTTGGTCTCA
    TGGGTGATGG TCAGCCTATT GGTCGTTACG ACGATATGTG GGCTGGTTGG
    TGCATCAAGG TGATCTGTGA CCACTTGAGC TTGGGAGTGA AGACCGGTTT
    ACCGTATATC TACCACAGCA AAGCGAGCAA CCCTTTTGTT AACCTGAAGA
    AGGAATACAA GGGAATCTTC TGGCAGGAGG AGATCATTCC GTTCTTCCAG
    AACGCAAAGC TATCGAAAGA AGCAGTAACT GTTCAGCAAT GCTACATTGA
    GCTCTCAAAG ATGGTCAAGG AGAAGTTGAG CTCCTTAGAC CCGTACTTTG
    ACAAGCTTGC AGATGCCATG GTTACATGGA TTGAAGCTTG GGATGAGCTT
    AACCCACCAG CAGCCAGTGG CAAAGCTTGA GAGCAGTATG AGCCAAAAAG
    AAAAAGCCAC CAAAGTTTTG GTTATTTTTA GCTCAAATTA TCGTTACTTT
    TAAATTTCTG ATTTTACGAA CCTTTCTTGC TTTTTTTACA CATTTGAGTA
    GTTTTCATCA TCAGTACTTT CTCATTGTCC GGTTATGGTT TTTGCATTTG
    GTTTAAATAT CACCGGTTTA TTTATAAACA GTGGTGGATT AGTAGTACTA
    TTTTCTGAGT TTTTTTCTTT GTTTCATTAA TAAAAAGGCC TTTTCATAGG
    TGTTTGCAAC T

    Gene models with high sequence identity

    1. AT5G15650.1 [+] show detail - reversibly glycosylated polypeptide 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Alpha-1,4-glucan-protein synthase, UDP-forming 1.3e-271
    HMMPfam Alpha-1,4-glucan-protein synthase, UDP-forming 2.1e-186

    See the detailed result >

    AT5G15650.1

    Model type
    Protein coding
    Short Description
    reversibly glycosylated polypeptide 2
    Curator Summary
    Reversibly Glycosylated Polypeptide-2. Constitutive expression in tobacco impairs plant development and virus spread.
    Computational Description
    reversibly glycosylated polypeptide 2 (RGP2); FUNCTIONS IN: transferase activity, transferring hexosyl groups, glycogenin glucosyltransferase activity; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: cytosolic ribosome, cell wall, membrane; EXPRESSED IN: male gametophyte, guard cell, root, cultured cell, leaf; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Alpha-1,4-glucan-protein synthase, UDP-forming (InterPro:IPR004901); BEST Arabidopsis thaliana protein match is: reversibly glycosylated polypeptide 1 (TAIR:AT3G02230.1); Has 259 Blast hits to 255 proteins in 45 species: Archae - 24; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 223; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR