F24247

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24247

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24247

Determination of introduced cDNA(s)

  • RAFL06-09-A05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-09-A05 - Resource: pda07512

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-09-A05 - full reading 
    ATAATCAAAA CCACAAAGAA GACTCCAACA TAATTCATCA TCTATGGCTT 
    CTTCACATCA ACAACAGCAA GAACAAGACC AGTCAGCTTT AGATCTCATA 
    ACCCAACACC TTCTTACTGA TTTCCCTTCC TTAGACACCT TTGCCTCCAC 
    CATCCACCAC TGCACCACCT CAACTCTAAG CCAACGCAAA CCACCTCTTG 
    CCACTATAGC AGTTCCTACT ACTGCACCGG TGGTTCAAGA GAATGATCAA 
    AGGCATTACA GAGGCGTCAG GAGAAGACCA TGGGGTAAGT ATGCGGCTGA 
    GATCAGAGAC CCAAACAAGA AAGGTGTTCG TGTCTGGTTA GGCACTTTTG 
    ACACAGCCAT GGAAGCTGCA AGAGGTTATG ACAAGGCAGC TTTTAAACTA 
    CGAGGAAGCA AAGCTATTCT TAACTTCCCA CTTGAAGCAG GAAAGCATGA 
    GGACTTGGGA GACAACAAGA AGACTATTTC TTTAAAAGCA AAGAGGAAGA 
    GACAGGTGAC GGAGGATGAA AGCCAGCTGA TCAGCCGTAA AGCTGTTAAG 
    AGGGAAGAAG CTCAGGTTCA GGCTGATGCT TGTCCATTAA CGCCATCAAG 
    TTGGAAGGGG TTTTGGGACG GAGCAGACAG TAAAGACATG GGAATATTTT 
    CCGTGCCTCT GTTATCTCCT TGTCCATCTC TTGGACACTC TCAACTCGTA 
    GTTACTTAAG CTTCAGAGGG TCAAACTGGA AAAAATCAAC ATTGGATTGT 
    TTTCAAAGCT TCTAGATTAG CTGATTGTAA AAAAATGTTT TACTATATTC 
    ATTCATTCTT CTT

    Gene models with high sequence identity

    1. AT5G51190.1 [+] show detail - Integrase-type DNA-binding superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 24.342
    superfamily DNA-binding, integrase-type 4.6e-24
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 4e-10
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 4e-10
    Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 2.5e-24
    HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 8.9e-37
    HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 6e-16

    See the detailed result >

    AT5G51190.1

    Model type
    Protein coding
    Short Description
    Integrase-type DNA-binding superfamily protein
    Curator Summary
    encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
    Computational Description
    Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response factor 104 (TAIR:AT5G61600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR