F24318

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24318

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24318

Determination of introduced cDNA(s)

  • RAFL06-16-N18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-16-N18 - Resource: pda07595

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-16-N18 - full reading 
    ATCTTCTAAG AAAGAAACAA AGAAAGACTT CACATTTTAC CATTATTTGC 
    TCTGAGCTCA GTAGGAGAGT TCAAGAAACA ATGGCAAAGA TGCAATTATC 
    AATCTTTATC GCTGTCGTTG CGCTTATCGT CTGCTCTGCA TCTGCTAAAA 
    CCGCAAGCCC TCCAGCTCCA GTGCTGCCAC CGACACCAGC TCCAGCACCA 
    GCCCCGGAAA ATGTGAATCT CACCGAGCTT TTAAGTGTAG CTGGTCCGTT 
    CCACACATTC CTCGACTACC TTCTCTCGAC TGGAGTCATT GAGACTTTCC 
    AAAACCAAGC TAACAACACT GAGGAAGGCA TCACAATCTT TGTCCCTAAA 
    GATGATGCTT TCAAAGCTCA GAAGAATCCT CCTTTGTCAA ATCTCACAAA 
    GGATCAGCTT AAGCAGCTTG TTCTCTTCCA TGCTCTGCCT CATTACTATT 
    CGCTTTCGGA ATTCAAGAAC TTGAGCCAAT CTGGTCCAGT GAGCACCTTT 
    GCTGGTGGTC AATACTCCTT GAAATTCACT GATGTTTCTG GCACGGTTAG 
    GATTGATTCT TTATGGACCA GGACTAAAGT CAGCAGCAGT GTTTTCTCCA 
    CTGACCCTGT TGCGGTTTAC CAAGTGAACC GCGTGCTTCT ACCCGAAGCA 
    ATCTTTGGTA CTGATGTCCC TCCAATGCCT GCTCCAGCTC CTGCTCCTAT 
    CGTTAGTGCT CCTTCGGATT CTCCTTCAGT TGCTGATTCT GAAGGAGCTT 
    CTTCACCAAA GTCCTCACAC AAGAACTCCG GACAAAAGCT GCTACTTGCA 
    CCAATCTCCA TGGTTATTTC CGGTTTGGTG GCATTGTTCT TGTGATCAGA 
    TGGTTTTGCA GATTGAGTTA TGTTTTTAAG TTACAATGTG AAAGATTGTA 
    TTACATCATT TGAATTGTCT TTTTGATTTT TGAAACCCAT TTTTTATTAT 
    ACATTTTTAT CATCG

    Gene models with high sequence identity

    1. AT2G04780.1 [+] show detail - FASCICLIN-like arabinoogalactan 7
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart FAS1 domain 3e-24
    superfamily FAS1 domain 1.8e-26
    ProfileScan FAS1 domain 19.747
    HMMPfam FAS1 domain 8.3e-22

    See the detailed result >

    AT2G04780.1

    Model type
    Protein coding
    Short Description
    FASCICLIN-like arabinoogalactan 7
    Curator Summary
    fasciclin-like arabinogalactan-protein 7 (Fla7)
    Computational Description
    FASCICLIN-like arabinoogalactan 7 (FLA7); LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan 6 (TAIR:AT2G20520.1); Has 713 Blast hits to 707 proteins in 79 species: Archae - 4; Bacteria - 65; Metazoa - 1; Fungi - 0; Plants - 633; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR