F24412

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24412

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F24412

Determination of introduced cDNA(s)

  • RAFL06-74-D03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-74-D03 - Resource: pda03477

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-74-D03 - full reading 
    GAACTTGTTT TTGGTTCATC TCTCAAAACC AAAATCACTA AAGAGGAGAA 
    GATTGCTAAA GTTTGATAAA ACATTCCAAA ATCAATGGCT GATAGGATCA 
    AAGGTCCATG GAGTCCTGAA GAAGACGAGC AGCTTCGTAG GCTTGTTGTT 
    AAATACGGTC CAAGAAACTG GACAGTGATT AGCAAATCTA TTCCCGGTAG 
    ATCGGGGAAA TCGTGTCGTT TACGGTGGTG CAACCAGCTT TCGCCGCAAG 
    TTGAGCATCG GCCGTTTTCG GCTGAGGAAG ACGAGACGAT CGCACGTGCT 
    CACGCTCAGT TCGGTAATAA ATGGGCGACG ATTGCTCGTC TTCTCAACGG 
    TCGTACGGAC AACGCCGTGA AGAATCACTG GAACTCGACG CTCAAGAGGA 
    AATGCGGCGG TTACGACCAT CGGGGTTACG ATGGTTCGGA GGATCATCGG 
    CCGGTTAAGA GATCGGTGAG TGCGGGATCT CCACCTGTTG TTACTGGGCT 
    TTACATGAGC CCAGGAAGCC CAACTGGATC TGATGTCAGT GATTCAAGTA 
    CTATCCCGAT ATTACCTTCC GTTGAGCTTT TCAAGCCTGT GCCTAGACCT 
    GGTGCTGTTG TGCTACCGCT TCCTATCGAA ACGTCGTCTT CTTCCGATGA 
    TCCACCGACT TCGTTAAGCT TGTCACTTCC TGGTGCCGAC GTAAGCGAGG 
    AGTCAAACCG TAGCCACGAG TCAACGAATA TCAACAACAC CACTTCGAGC 
    CGCCACAACC ACAACAATAC GGTGTCGTTT ATGCCGTTTA GTGGTGGGTT 
    TAGAGGTGCG ATTGAGGAAA TGGGGAAGTC TTTTCCCGGT AACGGAGGCG 
    AGTTTATGGC GGTGTTGCAA GAGATGATTA AGGCGGAAGT GAGGAGTTAC 
    ATGACGGAGA TGCAACGGAA CAATGGTGGC GGATTCGTCG GAGGATTCAT 
    TGATAATGGC ATGATTCCGA TGAGTCAAAT TGGAGTTGGG AGAATCGAGT 
    AGACAAAGTG AGATTATTAG GAAACTGTTT AAATTGGAGA AGAAGAAAAA 
    TGCTCTGTTT TTTTCTCCTT TGGATTAGGC TTAAGAATTT TGGGTTTTAA 
    GGAAATGTAT AGAGGAAATC GAGTGAACAA AGCTCGAGAG CTGGGGACGT 
    AGTGACGAAG ACGAAGATCA AATTTCTCTT AAGCTATTCA GGAAAATAAA 
    ATAAATTTTT ATTTATAACC

    Gene models with high sequence identity

    1. AT5G67300.1 [+] show detail - myb domain protein r1
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 27.399
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 19.77
    HMMSmart SANT, DNA-binding 1.6e-17
    HMMSmart SANT, DNA-binding 1.3e-14
    HMMPanther R2R3-MYB TRANSCRIPTION FACTOR 1e-185
    HMMPanther Myb transcription factor 1e-185
    Gene3D Homeodomain-related 3.6e-16
    Gene3D Homeodomain-related 8.4e-15
    superfamily Homeodomain-like 1.4e-22
    superfamily Homeodomain-like 3.1e-08
    HMMPfam Myb, DNA-binding 1.7e-16
    HMMPfam Myb, DNA-binding 2e-15

    See the detailed result >

    AT5G67300.1

    Model type
    Protein coding
    Short Description
    myb domain protein r1
    Curator Summary
    Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli.
    Computational Description
    myb domain protein r1 (MYBR1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 77 (TAIR:AT3G50060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR