F24426

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24426

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24426

Determination of introduced cDNA(s)

  • RAFL09-67-A02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-67-A02 - Resource: pda09890

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-67-A02 - full reading 
    AGAAGATTAA ACATTCCTCT CGCCGGAGAA CTAACTGCTC GATAGATAGA 
    GATAGAGAGA GAGCTCTGAT AACTGCCATT CTGTCTCTAT CTGCTTCCTC 
    TAGATACACG TTAGTTTTTT TTTCTTTGAA AGGGGCTAAA TTTCGTACAC 
    ACGACCTATT TCTTCTTCTT ATTGGATTTT GTAGAGAAAA CTTTATTATA 
    TAGGTTTCTG GGGAATCTTC TGAGCCGTTT AGAACAAGGA TTTAGGCAAA 
    AATATGGTCA GTTAGTTTCT TGTGCTAGCA ATTTTGAATG GGAGATTGCG 
    ACGACGACGA CTAGTCTCTC CTCGAATCAG GGTTTATAGT TGTTGTTGAT 
    AGAGATATTG AATTGGAACC AAAAGAACTC AATGATAGAG TAGTGAATTT 
    TGGATGTAGT GTTTTTCTCA TCAACGGAGT AATAATAACA ATAATAATGA 
    GTAGCGATGA TACGATTGAG GAGAGTTTGC TTGTGGATCC CAAATTGTTG 
    TTCATCGGCT CCAAGATTGG TGAAGGCGCT CACGGCAAAG TCTACCAAGG 
    AAGGTATGGT CGTCAGATTG TTGCAATCAA AGTTGTCAAC CGGGGCTCCA 
    AACCTGACCA GCAATCTTCT CTCGAGAGCC GTTTCGTCCG TGAGGTCAAT 
    ATGATGTCCC GCGTTCAACA CCATAACCTT GTCAAGTTTA TTGGAGCGTG 
    CAAAGATCCT TTAATGGTAA TAGTAACAGA GCTTCTCCCA GGGATGTCTC 
    TCCGTAAATA TCTCACCAGC ATCCGTCCTC AGTTGCTCCA TCTCCCTCTT 
    GCTCTCTCCT TTGCCCTTGA CATCGCCCGT GCCTTGCACT GCTTACACGC 
    CAATGGTATC ATTCACAGAG ACCTCAAACC TGACAACTTA TTGCTCACGG 
    AGAATCACAA ATCCGTCAAG CTTGCTGATT TCGGGCTTGC TAGGGAAGAA 
    TCCGTGACTG AGATGATGAC TGCTGAGACT GGGACTTACC GTTGGATGGC 
    TCCTGAGCTC TACAGTACAG TGACCCTGCG TCAAGGAGAG AAGAAGCATT 
    ACAACAACAA AGTTGATGTC TACAGCTTTG GAATCGTGCT TTGGGAGCTT 
    CTCACTAATC GTATGCCATT CGAGGGCATG TCCAATCTGC AAGCCGCCTA 
    CGCAGCAGCA TTCAAGCAGG AGAGGCCCGT AATGCCAGAG GGGATATCTC 
    CGAGTCTGGC GTTCATAGTG CAGTCTTGTT GGGTGGAGGA CCCAAACATG 
    AGGCCAAGCT TCAGTCAAAT TATCAGACTG CTCAATGAGT TCCTCCTTAC 
    CCTGACTCCT CCGCCTCCTC AGCCTCTGCC TGAGACTGCC ACCAACAGGA 
    CCAATGGCCG AGCCATCACT GAGTTCTCCA TCCGTCCAAA AGGGAAATTT 
    GCCTTCATTC GCCAGCTTTT CGCTGCCAAG AGGAACATAA ACTCTTAGGT 
    ACAAGAAGGG GTCTTCTTTG TCTTTGCCAC TGCCACTGCT TTGGTGGATA 
    AATGACATTA GCAGAGAGAG AGAAGTAGAA AGTTAGACTT ACTTAAAGTC 
    TATAGCGTAG TTAAGTACTC AATCTTCTTC TTGTCAAGTG ATTAACTGGT 
    AGTATCACAC GCCAAACTAA TTGGTTAAAT GTTATAACTT AAAGCCTATG 
    TTTTATCCTT TATCAATACT TGAAACAAAA CTTAGGAGAT CAACTAACTA 
    TGTATATTAT CGATTATATA AGTTTTATGT TT

    Gene models with high sequence identity

    1. AT5G01850.1 [+] show detail - Protein kinase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Serine/threonine-protein kinase, ATN1-like 9.5e-206
    HMMPanther SERINE-THREONINE PROTEIN KINASE 9.5e-206
    superfamily Protein kinase-like domain 3.2e-78
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPfam Serine-threonine/tyrosine-protein kinase 4.7e-60
    Gene3D no description 1.7e-17
    Gene3D no description 1.4e-51
    ProfileScan Protein kinase, catalytic domain 45.22
    FPrintScan TYRKINASE 1e-09
    FPrintScan TYRKINASE 1e-09
    FPrintScan TYRKINASE 1e-09
    FPrintScan TYRKINASE 1e-09
    HMMSmart Serine/threonine-protein kinase domain 5.1e-71
    HMMSmart Tyrosine-protein kinase, catalytic domain 1.2e-68

    See the detailed result >

    AT5G01850.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase, ATN1-like (InterPro:IPR015784); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G27560.1); Has 131148 Blast hits to 129643 proteins in 5072 species: Archae - 162; Bacteria - 15033; Metazoa - 49603; Fungi - 12189; Plants - 33321; Viruses - 522; Other Eukaryotes - 20318 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR