F24437

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24437

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24437

Determination of introduced cDNA(s)

  • RAFL09-14-K16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-14-K16 - Resource: pda05455

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-14-K16 - full reading
    TGGTTCTTCT TCTTCCTCTT CATTTTACTT TCTCTTCCCG ATTTCTCTCT 
    GTCCGATTCA CCTTTTCCTC CGATCTCGGT CTCCTTAGAT TCCGGAATAA
    TCCCCTCAAG GCTTGGCTTA GTAATCGTCG TTTTCTCCGC CATGAGTTCC
    AATACGGCGT CGTCCAGCGC GGGGGCAGCC GGATCGGGAG ATTCTTCCGC
    CGCTAGGAAG AATTCAAAGC GACCCAAGTA TTCGAAGTTC ACACAGCAGG
    AGCTTCCAGC TTGCAAGCCA ATTCTAACCC CTGGTTGGGT CATTTCGACA
    TTTTTGATAG TCAGTGTTAT CTTTATTCCC CTTGGAGTTA TCTCCCTTTT
    CGCTTCCCAG GATGTTGTGG AGATCGTTGA TCGGTATGAT ACTGAGTGCA
    TTCCGGCACC TGCTAGGACT AACAAGGTTG CATATATTCA AGGAGATGGA
    GATAAAGTTT GTAACCGGGA TCTTAAAGTG ACAAAGCGTA TGAAGCAACC
    TATCTATGTT TATTACCAAC TTGAGAATTT CTACCAGAAT CACCGAAGGT
    ATGTAAAAAG TCGAAGTGAT TCACAGTTGA GAAGTACAAA ATACGAGAAT
    CAAATAAGTG CATGCAAGCC TGAGGATGAT GTTGGTGGGC AGCCGATTGT
    GCCGTGTGGT CTAATTGCTT GGAGTCTTTT TAACGACACA TACGCGTTAT
    CAAGAAACAA TGTAAGCCTA GCTGTGAACA AAAAAGGCAT TGCATGGAAG
    AGTGACAAGG AACACAAGTT TGGGAACAAG GTCTTCCCCA AGAATTTTCA
    AAAGGGGAAT ATCACAGGTG GTGCTACTTT AGATCCAAGA ATACCGCTTA
    GTGAACAAGA AGATCTCATT GTGTGGATGA GAACCGCAGC ATTGCCAACA
    TTTAGAAAAC TTTACGGAAA GATAGAGTCT GACCTCGAGA TGGGTGACAC
    CATACACGTT AAGCTGAACA ACAACTACAA CACGTACAGC TTCAATGGAA
    AGAAGAAGCT TGTTTTGTCA ACCACTAGTT GGCTGGGTGG GAAGAACGAT
    TTCCTTGGCA TTGCTTACCT GACAGTTGGC GGGATCTGTT TCATTTTGGC
    CCTCGCATTT ACCATCATGT ACCTTGTGAA ACCCAGGCGT CTTGGAGATC
    CGTCCTACTT GTCATGGAAT AGAAATCCTG GAGGTCGGTA ACAAGCTTGG
    AAAGGGAGAG AGAGAGCTCT AATCTGCGTG TGTAAATCTT ATCCATCCAT
    GTACACATAC AATGTAATTT TTGCTTACAT ACTATGTAAT CCTTGCTTGC
    AAAATGGTTT CTTCGGTGAG AGCTTAAATC CCACATAATA CTTTGTTGTT
    GTTGTTCCAA ACCAGTCTAA TATATTACTT TTGTCCCC

    Gene models with high sequence identity

    1. AT1G54320.1 [+] show detail - LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Protein of unknown function DUF284, transmembrane eukaryotic 1.5e-230
    HMMPanther Protein of unknown function DUF284, transmembrane eukaryotic 5.4e-159
    HMMPfam Protein of unknown function DUF284, transmembrane eukaryotic 2.8e-95

    See the detailed result >

    AT1G54320.1

    Model type
    Protein coding
    Short Description
    LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
    Computational Description
    LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: ALA-interacting subunit 1 (TAIR:AT3G12740.1); Has 852 Blast hits to 849 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 222; Plants - 160; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR