F24447

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24447

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24447

Determination of introduced cDNA(s)

  • RAFL09-48-O19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-48-O19 - Resource: pda08416

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-48-O19 - full reading 
    AAGAAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAA 
    AGTGGGGGAA AAAAGGCGAA GAATACGCAG ATTCCATCCA ATTTAGGGTT 
    AGGACTTCCC CTAATTTGGA AACCTAGTCC TGTTTCCTGA TCTGTTTTCC 
    GGATCGGACG AGAGACGAAT TAACGAAAAT GGGCGCGAAT TCTATTCCGA 
    CGGACGCAAC CATTGATCTT GATGAGCAGA TCTCGCAGCT CATGCAGTGC 
    AAGCCTCTCT CGGAGCAACA GGTTAGAGCA TTATGCGAGA AAGCCAAGGA 
    GATCTTAATG GATGAAAGCA ATGTTCAGCC TGTGAAAAGC CCTGTGACAA 
    TCTGCGGTGA TATTCATGGA CAGTTCCATG ATCTTGCAGA GCTTTTCCGT 
    ATAGGGGGAA TGTGCCCTGA TACCAATTAC CTGTTTATGG GAGACTATGT 
    GGACCGTGGT TATTATTCTG TTGAAACTGT TACGCTGTTA GTCGCCTTAA 
    AGATGCGATA TCCTCAGCGA ATCACTATTC TTAGAGGAAA CCATGAAAGT 
    CGTCAGATTA CTCAGGTTTA TGGATTTTAT GATGAATGTC TACGAAAGTA 
    CGGCAACGCA AATGTTTGGA AAATCTTTAC AGACCTCTTC GACTATTTTC 
    CTCTGACAGC CTTGGTTGAG TCAGAAATAT TTTGCCTTCA TGGTGGATTA 
    TCTCCATCTA TCGAGACCCT TGACAACATA AGGAATTTTG ATCGAGTTCA 
    AGAAGTGCCC CATGAAGGGC CGATGTGTGA CTTATTATGG TCTGACCCCG 
    ATGACCGATG TGGTTGGGGC ATCTCTCCTC GGGGTGCCGG ATATACATTT 
    GGTCAGGATA TATCTGAACA ATTCAATCAC ACAAACAACT TAAAGCTGAT 
    CGCCCGAGCT CACCAGTTGG TTATGGATGG ATACAACTGG GCTCACGAGC 
    AAAAAGTGGT TACTATTTTC AGTGCACCAA ACTATTGTTA CCGTTGTGGG 
    AACATGGCCT CGATTCTTGA GGTCGACGAC TGCAGGAACC ACACCTTCAT 
    CCAGTTTGAA CCAGCACCGA GGAGAGGAGA ACCAGACGTC ACCCGAAGGA 
    CTCCAGACTA TTTCCTGTGA TCACTGGACA CAGACTCATC TCAATCAGCA 
    GCTGCAGGCA CCCACAAGTG AAAAGTCACA GTTGGCTAAC TCTAGATTCT 
    GGTCCTATGC ATTGTGTTCA GGTTGCTCTG TTTAAAATTC AACTTAGTGC 
    CCACCACCGG AATATAGTGT GTATTATAGG CGAAGAAGGC TTCTTATCTT 
    CCTCTATAAC CAAGAAAAGA AAAAAGATAC CCATTATGAA CATTGTTTTG 
    TTGATGTTAT TAGCTTCTTC TTCTTCTCCC TTCTGCATCA GAATGTGGTT 
    TCATGTGAGA AATCTTCTAA TTTTATTTCA CGTTATTCGT TCTTGAACAT 
    CTCTGATTTT TGAATAGAAC CTTGAAATTG TTATGTTTAT TTGTTCTTCA 
    AAGCTTGATA TAATAACAAT AGTCGCTGAA CGCATCAGAT CAGCCACTCA 
    AAG

    Gene models with high sequence identity

    1. AT2G42500.1 [+] show detail - protein phosphatase 2A-3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SERINE/THREONINE PROTEIN PHOSPHATASE PP2A 1.1e-264
    HMMPanther Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 1.1e-264
    PatternScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 0
    superfamily Metallo-dependent phosphatases 1.5e-128
    HMMSmart Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.3e-165
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.4e-91
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.4e-91
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.4e-91
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.4e-91
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.4e-91
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.4e-91
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 3.4e-91
    HMMPfam Metallophosphoesterase 9e-42
    Gene3D no description 4.4e-127

    See the detailed result >

    AT2G42500.1

    Model type
    Protein coding
    Short Description
    protein phosphatase 2A-3
    Curator Summary
    Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].
    Computational Description
    protein phosphatase 2A-3 (PP2A-3); FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-4 (TAIR:AT3G58500.1); Has 6823 Blast hits to 6634 proteins in 485 species: Archae - 80; Bacteria - 208; Metazoa - 2397; Fungi - 1409; Plants - 992; Viruses - 2; Other Eukaryotes - 1735 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR