F24450

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24450

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24450

Determination of introduced cDNA(s)

  • RAFL09-31-H08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-31-H08 - Resource: pda05853

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-31-H08 - full reading 
    GATGCTACTT CTGATTTACC CTTTCTCTGC TTTTTTCTCT CACTCTCTCA 
    GTTTTCTCCT CCTTGATTCC TAAAGTCTTC TCCTTTGCGT GCATTTCTTC 
    AATTTTCAGA TTCTTCCTAA GGTGGTAGAA TGATGAAATG AGAATCGATA 
    GATAAGAGTT TAAAGAGCAC CAGAATCTTT GTTATCTTGC AATGTCGACG 
    ACGTCTTTGC AAACGATTGG TGCTATTAAG TCTTATCATC ATCAAGCTCA 
    GCATTTGGTT AAGAATTATC TCTTAGCTGA TCCTTTTATT CCTTACACTT 
    CTGTCCTCAC CGGCATTTTC CTTTGCAAAG TGGTTTATGA TCTTTGTCAT 
    TTTATCAGCA ACTCACATTC TAAGACTTAT ATCATCCTCA CGAAAATTCA 
    AAGAATCGAA TGGAATAACC GTGGTATCTC GACAGTTCAT GCTATTTTTA 
    TTTCGGCTAT GTCGCTGTAC TTTGTGTTCT GGTCCGACCT CTTTTCCGAT 
    AGGTGGCATA ATGATCTTGT TGTTTTCCGG AGCTCACGAC TTTCTTCTCT 
    TGGTTTAGGG ATATCTATTG GTTACTTCCT TGCTGATCTT GGGATGATCT 
    TCTGGAAATA TCCTTCTTTG GGTGGAATTG AGTATATTGT GCATCACTCG 
    CTATCGGGGG TTGCAGTTGC CTACTCTTTA TTTTCCGGGG AAGGACAGTT 
    ATATACCTAC ATGGTCCTCA TCTCCGAGAT TACAACCCCA GAGATCAACT 
    TGAGATGGTA CCTGGACACG GCTGGTATGA AAAAATCATT GGCATACGTT 
    GTTAATGGCG TTTTCATCTT CTTGGCTTGG CTGGTTGCTA GAATTCTACT 
    GTTCATATAC ATGTTTTATC ATGTTTATCT CCACTACAAC CAGGTCATGA 
    GGATGCACAT CTTTGGTTAC GTTCTGGTAT TCGGCGTACC AGCTGCGCTC 
    GGTGTCATGA ACTTGATATG GTTCGGGAAG ATTGTGAGAG GGGTAAAGAA 
    AACATTAGCA AAGAGATGTG AATGTTGAGA TTGGTGAGTC TTCCTCACAC 
    CGTTTCTTCA CTTCATCATC TCCTTACTTC TTCGTCCCTC TGACATATGC 
    CTGTCTCTCT AGTGTAAGTA GTTTTTGTCT GATGAAGAAA AAAAAACGAA 
    AAAACAAAAA TGATAATGAT ACGATCCTCT GACTCTGTAA ATGATCAAAA 
    TTCAAGTCTC TTCTTTACGT TTTCTCATTA TACAATGTAA TTCTGTTTTC 
    ATTCTAATAG TTTTGGTTCT AGGGTTTTGA TTCAATTTCT GCTACATTTC 
    GTTTAACCGG AGTTCGATAC AGTACTACCA AAATGATGAA CAACTGTTTG 
    GTGTTCAAGT TCTATGGAAG AGAAAACATT TGGTCT

    Gene models with high sequence identity

    1. AT1G31300.1 [+] show detail - TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CT120 PROTEIN 0.00021
    HMMPfam TRAM/LAG1/CLN8 homology domain 1e-33
    HMMSmart TRAM/LAG1/CLN8 homology domain 2.7e-53
    ProfileScan TRAM/LAG1/CLN8 homology domain 33.424

    See the detailed result >

    AT1G31300.1

    Model type
    Protein coding
    Short Description
    TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
    Computational Description
    TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT4G19645.2); Has 633 Blast hits to 633 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 278; Fungi - 146; Plants - 152; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR