F24517

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24517

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24517

Determination of introduced cDNA(s)

  • RAFL09-36-A20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-36-A20 - Resource: pda06127

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-36-A20 - full reading 
    AAAAAGAGAG AATCTTTCCG GTGAATGGGA AATGGCAAGA AGAAGGATAC 
    GAGTACGATG AAGTTGAGTT AGAGCGGGAG AGAGAGACAT ACCGTTGACC 
    ACTAAAGACG AGAGCTTTAG AGAGAGACGC AACAATGGAG CTGAATATTT 
    CCGAGAGTCG AAGCAGATCA ATTCGTTGCA TTGTGAAACT TGGAGGTGCG 
    GCAATTACTT GCAAAAACGA GCTGGAGAAG ATTCACGATG AAAATCTGGA 
    GGTCGTGGCG TGTCAGTTAC GTCAAGCTAT GTTGGAGGGT TCAGCTCCAA 
    GCAAGGTTAT TGGCATGGAT TGGAGCAAGA GACCTGGAAG CTCTGAGATT 
    TCTTGTGATG TGGATGACAT AGGGGATCAA AAGTCTTCTG AGTTTAGTAA 
    ATTTGTTGTG GTTCATGGCG CTGGTTCCTT TGGGCACTTT CAGGCCAGTA 
    GATCTGGGGT TCACAAAGGA GGACTTGAGA AACCTATTGT CAAAGCTGGT 
    TTCGTTGCTA CTCGTATATC TGTGACAAAT CTTAATCTTG AAATTGTACG 
    AGCACTAGCC CGAGAGGGCA TTCCTACGAT AGGCATGTCT CCATTTTCAT 
    GTGGTTGGTC AACCTCCAAA AGAGATGTGG CTTCTGCAGA TCTAGCAACC 
    GTAGCTAAAA CCATAGACTC AGGATTTGTC CCTGTTCTCC ATGGAGATGC 
    AGTGCTGGAC AATATACTGG GCTGCACCAT ATTGAGTGGT GATGTTATCA 
    TCCGTCATCT TGCAGATCAT TTGAAGCCAG AATATGTTGT CTTTCTCACA 
    GATGTACTAG GTGTCTACGA TCGACCACCT TCACCTTCAG AGCCCGACGC 
    GCTGCTCTTG AAAGAGATCG CTGTTGGAGA AGATGGAAGC TGGAAGGTTG 
    TGAATCCACT GTTGGAGCAC ACAGACAAGA AAGTTGACTA CTCTGTTGCG 
    GCGCACGATA CAACCGGTGG AATGGAAACG AAGATATCAG AAGCTGCTAT 
    GATTGCAAAA CTTGGAGTCG ATGTCTACAT TGTGAAGGCT GCGACAACTC 
    ATTCACAGAG AGCACTAAAC GGTGATTTGA GAGATAGTGT TCCTGAAGAT 
    TGGCTTGGTA CTATCATCAG ATTCTCAAAG TAGAATAATC TCCTGACAAA 
    TACACTAATT CCAGTTCCTC AACAAAGGAA AGCATTGACC TTTTCTTGCT 
    ATTACTGTTT TACCAGACTT TGTGCAAGGA ATACAAAATC GTGTAATGTC 
    AAAACCAGTT AAAATGTCGA ATACTATCGC AGCCTGTGTA ACTCTATGTT 
    TCCACAAGTA TTCAATCACA TATCTTACAC TGTTATTGTC AAAAAAAAAA 
    AAAAAA

    Gene models with high sequence identity

    1. AT1G26640.1 [+] show detail - Amino acid kinase family protein
      E-value: 0; Score: 99.70

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Aspartate/glutamate/uridylate kinase 5e-22
    HMMPfam Aspartate/glutamate/uridylate kinase 2.1e-53

    See the detailed result >

    AT1G26640.1

    Model type
    Protein coding
    Short Description
    Amino acid kinase family protein
    Computational Description
    Amino acid kinase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellular amino acid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/glutamate/uridylate kinase (InterPro:IPR001048); Has 592 Blast hits to 592 proteins in 236 species: Archae - 208; Bacteria - 227; Metazoa - 7; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR