F24526

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24526

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24526

Determination of introduced cDNA(s)

RAFL06-12-K17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-12-K17 - Resource: pda07556

full reading [+] show sequence

AAGAACTAGT CAGTTTCTTT GTTTTAGACA ACAAGAATCT GTGAACTAAC 
ACAAAAACAT TGAAAGAATG ATCTTAACAA TGAAACTTGT TCACCCTCTC 
CATCACTCTT TGTCTTCCTC CATTCCCTTT CCCTCAAGAA AAAGGCAATC 
CAAACCGTAC CGGTGCTCGT TACCTTCTCC CGGCTGCGAA AAGGTCATCA 
GAACAGAGAC TGTCCTGCCT CCGGCGCCGG TGAGTTGTGA AGGGAGAAGG 
GTCTTACTTG GATGTCTTCT CGCTACAGCT TCTGGGATTT TGTCAACTGG 
TTCAGCCGAG GCAGTAAGCA CCAGTAGAAG AGCTCTACGT GCATCCAAGT 
TACCGGAAAG CGATTTCACG ACTCTCCCCA ATGGTCTCAA GTACTATGAT 
ATAAAGGTTG GCAATGGAGC AGAGGCTGTG AAAGGATCTC GGGTCGCAGT 
TCACTATGTT GCAAAATGGA AAGGGATAAC GTTCATGACA AGTCGACAAG 
GACTTGGTGT TGGAGGTGGA ACGCCTTATG GGTTTGACGT TGGTCAATCA 
GAGAGAGGCA ATGTTCTGAA AGGACTTGAT CTTGGTGTTG AAGGGATGCG 
TGTAGGCGGT CAGAGATTGG TGATTGTTCC TCCCGAGCTG GCTTACGGGA 
AGAAAGGAGT GCAAGAGATT CCTCCAAACG CTACGATAGA GCTTGACATT 
GAGCTGTTAT CAATCAAGCA GAGTCCTTTC GGGACGCCAG TGAAGATAGT 
TGAAGGCTAA AAGGACTAAT GAAGCCAACA TTGTACCAAG ATTTTCTGTG 
TACATTCAGT AAAAAACTAT AAAATTGATC AAAGCTATGG AAGATTCAAC 
TGTATGAGAA GAATCTGTTT AATGGATTAT ACCGGCTAGT CCGGTTTTGT 
AACCG

Gene models with high sequence identity

AT3G10060.1 [+] show detail - FKBP-like peptidyl-prolyl cis-trans isomerase family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Peptidyl-prolyl cis-trans isomerase, FKBP-type	2.2e-25
HMMPanther	FK506-BINDING PROTEIN 4 PLANT, YEAST	8.7e-35
HMMPanther	Peptidyl-prolyl cis-trans isomerase, FKBP-type	8.7e-35
ProfileScan	Peptidyl-prolyl cis-trans isomerase, FKBP-type	22.821
Gene3D	no description	1.7e-27
superfamily	FKBP-like	8.5e-32

See the detailed result >

AT3G10060.1

Model type: Protein coding
Short Description: FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Computational Description: FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G20810.1); Has 8406 Blast hits to 7908 proteins in 1571 species: Archae - 44; Bacteria - 4267; Metazoa - 1616; Fungi - 433; Plants - 872; Viruses - 0; Other Eukaryotes - 1174 (source: NCBI BLink).
Link: InterPro Scan - TAIR