F24535

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24535

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24535

Determination of introduced cDNA(s)

  • RAFL05-17-E19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-17-E19 - Resource: pda02717

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-17-E19 - full reading
    ACTGCCGACT AAACAGCGAA AATCCCAAAC AAAAAAATAA AAGAATGGCG 
    TCTCTGTGCC TTTCTCTCCA CCAAACCCTA ACTAATCCCC TGTCGGCTCC
    CAGATGCAGA CCACTCAGCC TCTCCTTCCC CGGATCCTCA ACCTTCTCGA
    CCCGCCCCTC TAGCAGACGC GCAACCGCCT TGACGACCCG CGCCTCCTAC
    ACCCCGACGC CGGCGACTGA GCGCGTGATT TCGATAGCGT CGTACGCGCT
    GCCGTTCTTC AATTCTCTGC AGTACGGGCG GTTCCTGTTC GCGCAGTACC
    CAAGGCTGGG ATTGCTGTTC GAGCCAATCT TCCCAATCCT GAACCTGTAC
    AGATCGGTGC CGTACGCGAG CTTCGTGGCA TTCTTCGGGC TGTACCTGGG
    AGTGGTGAGG AACACGAGTT TCAGTAGGTA CGTGAGGTTC AACGCGATGC
    AGGCGGTGAC GCTGGATGTG CTCCTGGCGG TTCCGGTGCT GCTGACCCGA
    ATACTGGATC CGGGTCAAGG AGGCGGGTTT GGAATGAAGG CGATGATGTG
    GGGGCACACG GGGGTTTTCG TCTTCAGCTT TATGTGTTTT GTGTATGGAG
    TCGTCAGCTC CTTACTCGGC AAAACTCCAT ACATTCCATT TGTCGCTGAT
    GCCGCCGGTA GACAACTCTA ATTCCGGCCA ATATCTACCT CACTCAGTGT
    TCGGGTTTTC GATTCTAGAA TCGGTTATTT CTGGTTTATA AGAGAGACCA
    AATCAATCAG TGTTGTTAAT TAACCATTAC CGTTTTG

    Gene models with high sequence identity

    1. AT2G47840.1 [+] show detail - Uncharacterised conserved protein ycf60
      E-value: 0; Score: 99.87

     

    InterPro Scan Digest

    See the detailed result >

    AT2G47840.1

    Model type
    Protein coding
    Short Description
    Uncharacterised conserved protein ycf60
    Computational Description
    Uncharacterised conserved protein ycf60; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55710.1); Has 358 Blast hits to 358 proteins in 92 species: Archae - 0; Bacteria - 125; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR