F24535

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24535

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24535

Determination of introduced cDNA(s)

  • RAFL05-17-E19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-17-E19 - Resource: pda02717

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-17-E19 - full reading 
    ACTGCCGACT AAACAGCGAA AATCCCAAAC AAAAAAATAA AAGAATGGCG 
    TCTCTGTGCC TTTCTCTCCA CCAAACCCTA ACTAATCCCC TGTCGGCTCC 
    CAGATGCAGA CCACTCAGCC TCTCCTTCCC CGGATCCTCA ACCTTCTCGA 
    CCCGCCCCTC TAGCAGACGC GCAACCGCCT TGACGACCCG CGCCTCCTAC 
    ACCCCGACGC CGGCGACTGA GCGCGTGATT TCGATAGCGT CGTACGCGCT 
    GCCGTTCTTC AATTCTCTGC AGTACGGGCG GTTCCTGTTC GCGCAGTACC 
    CAAGGCTGGG ATTGCTGTTC GAGCCAATCT TCCCAATCCT GAACCTGTAC 
    AGATCGGTGC CGTACGCGAG CTTCGTGGCA TTCTTCGGGC TGTACCTGGG 
    AGTGGTGAGG AACACGAGTT TCAGTAGGTA CGTGAGGTTC AACGCGATGC 
    AGGCGGTGAC GCTGGATGTG CTCCTGGCGG TTCCGGTGCT GCTGACCCGA 
    ATACTGGATC CGGGTCAAGG AGGCGGGTTT GGAATGAAGG CGATGATGTG 
    GGGGCACACG GGGGTTTTCG TCTTCAGCTT TATGTGTTTT GTGTATGGAG 
    TCGTCAGCTC CTTACTCGGC AAAACTCCAT ACATTCCATT TGTCGCTGAT 
    GCCGCCGGTA GACAACTCTA ATTCCGGCCA ATATCTACCT CACTCAGTGT 
    TCGGGTTTTC GATTCTAGAA TCGGTTATTT CTGGTTTATA AGAGAGACCA 
    AATCAATCAG TGTTGTTAAT TAACCATTAC CGTTTTG

    Gene models with high sequence identity

    1. AT2G47840.1 [+] show detail - Uncharacterised conserved protein ycf60
      E-value: 0; Score: 99.87

     

    InterPro Scan Digest

    See the detailed result >

    AT2G47840.1

    Model type
    Protein coding
    Short Description
    Uncharacterised conserved protein ycf60
    Computational Description
    Uncharacterised conserved protein ycf60; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55710.1); Has 358 Blast hits to 358 proteins in 92 species: Archae - 0; Bacteria - 125; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR