F24620

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24620

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24620

Determination of introduced cDNA(s)

  • RAFL05-15-D11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-D11 - Resource: pdz87491

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-15-D11 - 5 prime EST 
    TAAACCAAAA TCCTCAAAAG CCTATTTGGG GGATCATCAA CCTTCTATCA 
    TCACCATGGA TCCTTACAAG TATCGTCCTT CAAGCGCGTA CAACGCCCCA 
    TTCTACACCA CAAACGGTGG TGCTCCAGTC TCCAACAACA TCTCTTCCCT 
    CACCATCGGA GAAAGAGGTC CGGTTCTTCT TGAGGATTAT CATTTGATCG 
    AGAAGGTTGC TAATTTCACC AGAGAGAGGA TCCCTGAGAG AGTGGTTCAT 
    GCTAGAGGAA TCAGTGCTAA GGGTTTCTTT GAAGTCACCC ATGACATTTC 
    AAACCTCACT TGTGCTGATT TTCTCAGAGC CCCTGGTGTT CAAACTCCGG 
    TTATTGTCCG TTTCTCCACC GTTGTCCACG AACGTGCCAG TCCTGAAACC 
    ATGAGGGATA TTCGTGGTTT TGCTGTCAAG TTTTACACCA GAGAGGGAAA 
    CTTTGATCTT GTTGGGAACA ACACTCCGGT GTTCTTCATC CGTGATGGGA 
    TTCAGTTCCC GGATGTTGTC CACGCGTTGA AACCTAACCC GAAAACAAAC 
    ATCCAAGAGT ACTGGAGGAT TCTGGACTAC ATGTCCCACT TGCCTGAGAG 
    TTTGCTCACA TGGTGCTGGA TGTTTGATGA TGTTGGTATT CCACAAGATT 
    ACAGGCACAT GGAGGGTTC

    Gene models with high sequence identity

    1. AT1G20620.5 [+] show detail - catalase 3
      E-value: 0; Score: 100.00

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-15-D11 - 3 prime EST 
    GCTGCTTCAA GAAACATTGA TTTATTGTAA AAAGAGATTA CAAAGACAGT 
    GAGAGTAGAA AGGAAGGAAA CATGAGTTTT TGGGATTACA AGCATTATTA 
    TTATATAGAC AAGAAACAAC AACACATGTG ATTATCTTTT TGACGGATTT 
    AACGACCAAG CGATGATAGA TCGATGAGAT TGATTGTACC TCACATAGAC 
    TGAGCTTATA TGGAGATTGG CCTCTAGATG CTTGGCCTCA CGTTCAGACG 
    GCTTGCAAGT TTCTGTCCCA AGGATCGATC AGCCTGAGAC CAGTAAGAGA 
    TCCAGATGCC GCGGATCTCG TGGGTGAGAC GTGGCTCCGA TAGAATCTCC 
    ACCCATCTCT TAACAAACCT GTCTTGCCTG TCTGGTGCCC ATGATCTGTA 
    CCTGTCTCCA GCCTGTTTGA AGTTGTTCTC TTTCTTGATG ACGCACTTTG 
    TTCGAATTCC AGTGTAGGAG TTTGTAGGGG TGGGAACTTT CTCAGCGCAG 
    CGGACAGGAT CAAACTTTGA GGGGTAGTAA TTGATCTCCT CATCTCTGTG 
    CATGAAGTTC ATAAAACCTT CATGGTGATT GTTGTGGTGA GCACATTTGG 
    GAGCATTGAC TGGAAGCTGC AAATAATTCG GTCCAAGGCG ATGTCTCTGA 
    GTGTCACCAT AAGCAAAGAT CCTACACTGG AGCAGCTTGT CGTCTGAGTA 
    GT

    Gene models with high sequence identity

    1. AT1G20620.4 [+] show detail - catalase 3
      E-value: 0; Score: 100.00

    AT1G20620.4

    Model type
    Protein coding
    Short Description
    catalase 3
    Curator Summary
    Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.
    Computational Description
    catalase 3 (CAT3); FUNCTIONS IN: catalase activity, cobalt ion binding; INVOLVED IN: in 7 processes; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 1 (TAIR:AT1G20630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT1G20620.5

    Model type
    Protein coding
    Short Description
    catalase 3
    Curator Summary
    Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.
    Computational Description
    catalase 3 (CAT3); FUNCTIONS IN: catalase activity, cobalt ion binding; INVOLVED IN: in 7 processes; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 2 (TAIR:AT4G35090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR