F24621

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24621

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24621

Determination of introduced cDNA(s)

  • RAFL09-07-N23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-07-N23 - Resource: pda05214

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-07-N23 - full reading 
    ACACAAAGTA ATTACAATGG AACACAGAAA GGTAAGAGGG AACGGCATAG 
    ACATTCACGT AGCAATCCAA GGTCCCTCCG ATGGTCCTAT AGTCCTCCTC 
    CTCCATGGTT TCCCTGAGCT TTGGTACTCA TGGCGCCACC AGATCCCTGG 
    ACTCGCCGCT CGTGGCTACC GTGCCGTCGC TCCTGACCTA CGTGGTTACG 
    GTGACTCCGA TGCTCCCGCT GAGATCTCTT CCTACACATG CTTCAACATC 
    GTTGGTGACT TAATCGCCGT CATATCCGCC TTAACCGCCT CAGAGGATGA 
    GAAGGTCTTT GTGGTTGGAC ATGATTGGGG AGCTCTCATC GCTTGGTATT 
    TATGTCTCTT CCGACCAGAT AGAGTCAAAG CTCTGGTCAA CCTCAGTGTT 
    CCGTTCTCTT TCCGGCCAAC CGATCCATCG GTGAAGCCCG TTGATCGCAT 
    GCGTGCTTTC TACGGCGATG ATTACTATAT CTGCAGGTTT CAGGAATTTG 
    GAGATGTAGA AGCTGAGATT GCAGAGGTTG GAACAGAGAG AGTCATGAAG 
    AGACTACTCA CTTATAGAAC TCCTGGACCG GTAATTATCC CGAAGGACAA 
    AAGTTTTTGG GGATCCAAAG GCGAAACTAT ACCACTCCCG TCTTGGCTAA 
    CGGAGGAAGA TGTTGCTTAC TTCGTCAGCA AGTTTGAAGA GAAAGGCTTC 
    TCTGGTCCAG TCAATTACTA CCGTAACTTC AACAGGAACA ATGAGTTGTT 
    GGGTCCATGG GTGGGAAGCA AAATCCAGGT TCCTACAAAG TTTGTGATAG 
    GGGAGCTTGA TCTGGTCTAC TATATGCCTG GTGTGAAGGA ATATATACAT 
    GGTCCCCAGT TTAAGGAAGA TGTGCCTTTG CTTGAAGAGC CTGTGGTCAT 
    GGAAGGAGTG GCTCACTTCA TTAACCAAGA AAAGCCTCAG GAGATTCTCC 
    AAATTATCCT TGATTTCATC TCCAAATTCT AATGTTGCTT TCCCTTAAAT 
    TACTCTTTTA ATCAAGTTCC ATAATAAGTT GAATTATGAG GATATACATC 
    CTCATGTATG GTTGTATCAT CCTATAACCT ATATAATCTA TGTATGGATG 
    CGTGCATATT ATTTGAAAAA AAAAAAAAAA AT

    Gene models with high sequence identity

    1. AT2G26740.1 [+] show detail - soluble epoxide hydrolase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily alpha/beta-Hydrolases 1.1e-62
    FPrintScan Epoxide hydrolase-like 2.8e-50
    FPrintScan Epoxide hydrolase-like 2.8e-50
    FPrintScan Epoxide hydrolase-like 2.8e-50
    FPrintScan Epoxide hydrolase-like 2.8e-50
    FPrintScan Epoxide hydrolase-like 2.8e-50
    FPrintScan Epoxide hydrolase-like 2.8e-50
    FPrintScan ABHYDROLASE 4.4e-06
    FPrintScan ABHYDROLASE 4.4e-06
    FPrintScan ABHYDROLASE 4.4e-06
    HMMPanther EPOXIDE HYDROLASE 7.9e-123
    HMMPanther ALPHA/BETA HYDROLASE RELATED 7.9e-123
    Gene3D no description 9.6e-61
    HMMPfam Alpha/beta hydrolase fold-1 5.7e-14

    See the detailed result >

    AT2G26740.1

    Model type
    Protein coding
    Short Description
    soluble epoxide hydrolase
    Curator Summary
    Encodes a soluble epoxide hydrolase whose expression is induced by auxin and water stress.
    Computational Description
    soluble epoxide hydrolase (SEH); CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G26750.1); Has 16813 Blast hits to 16796 proteins in 1664 species: Archae - 95; Bacteria - 12002; Metazoa - 658; Fungi - 513; Plants - 624; Viruses - 3; Other Eukaryotes - 2918 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR