F24622

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24622

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24622

Determination of introduced cDNA(s)

  • RAFL09-15-K24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-15-K24 - Resource: pda01846

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-15-K24 - full reading 
    ATTCCCACTT CCACACATAC ACATATACAA CAGAGCAAGA GAGTCAATCA 
    AGTAGAGTGA AGATGGCAAC TAAACAAGAA GCTTTAGCCA TCGATTTCAT 
    AAGCCAACAC CTTCTCACAG ACTTTGTTTC CATGGAAACT GATCACCCAT 
    CTCTTTTTAC CAACCAACTT CACAACTTTC ACTCAGAAAC AGGCCCTAGA 
    ACCATCACCA ACCAATCCCC TAAACCGAAT TCGACTCTTA ACCAGCGTAA 
    ACCGCCCTTA CCGAATCTAT CCGTCTCGAG AACGGTTTCA ACAAAGACAG 
    AGAAAGAGGA AGAAGAGAGG CACTACAGGG GAGTGAGACG AAGACCGTGG 
    GGAAAATACG CGGCGGAGAT TAGGGATCCG AACAAAAAGG GTTGTAGGAT 
    CTGGCTTGGG ACTTACGACA CTGCCGTGGA AGCTGGAAGA GCTTATGACC 
    AAGCGGCGTT TCAATTACGT GGAAGAAAAG CAATCTTGAA TTTCCCTCTC 
    GATGTTAGGG TTACGTCAGA AACTTGTTCT GGGGAAGGAG TTATCGGATT 
    AGGGAAACGA AAGCGAGATA AGGGTTCTCC GCCGGAAGAG GAGAAGGCGG 
    CTAGGGTTAA AGTGGAGGAA GAAGAGAGTA ATACGTCGGA GACGACGGAG 
    GCTGAGGTTG AGCCGGTGGT ACCATTGACG TCGTCAAGTT GGATGGGGTT 
    TTGGGATGTG GGAGCAGGAG ATGGTATTTT CAGTATTCCT CCGTTATCTC 
    CGACGTCTCC CAACTTTTCC GTTATCTCCG TCACTTAAAA CTTCGGAAAA 
    GTCAACGTAC GATGACGTTT TCACTTGCGT CACTCTCATG ATTTCATTTA 
    TTCTTGTATA ATATAAAGGT AGCGGTAGTG TGCAAATATC AAATAAGTAG 
    TTTAATTAGT ACCAATCATT TTATTCATTA TTTTTTTTAG TAGAATATTT 
    GGATGTTGAA AATATAAATT TAATTTTGTA TTTGTTGATG TTATAAATTT 
    ATTGATTGTA TAAACATTCT TAGTCACCAA AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT5G61600.1 [+] show detail - ethylene response factor 104
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.4e-13
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.4e-13
    superfamily DNA-binding, integrase-type 3e-24
    ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 23.894
    HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 9.1e-16
    HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 4.1e-34
    Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 1e-24

    See the detailed result >

    AT5G61600.1

    Model type
    Protein coding
    Short Description
    ethylene response factor 104
    Curator Summary
    encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
    Computational Description
    ethylene response factor 104 (ERF104); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G51190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR