F24627

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24627

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24627

Determination of introduced cDNA(s)

  • RAFL11-06-B02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-06-B02 - Resource: pda07064

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-06-B02 - full reading 
    AAACCCTAAA AATTCACGCA TTTTGGCACA GTTAAGTTCG CTGAATCCCG 
    TTCCTCTTCC TCTGACTCTC TCCCCAAGAA AATCACTCAG ATCAAAGCTC 
    AAATTTCGGA TCTCACAGCT GTCGCTTCGA GGAAAGGATG ACCAGAGAAC 
    ATCCTCCCGA GCCTCTTGAT TTCTTCATCT GGACTGTTGA GGATGTTGGG 
    TCTTGGCTCG AGGAGATAAA CCTTGGGGGC TACCGCCAGA TTTTCAAAGA 
    AAATGGTGTC AATGGAGAAT ATCTAGAAAG CATGTCTGTG TTTACTACCG 
    AGCAGATCCT TCACTTCATA AGGAGGCATC ACATGAAGTG GGGAGACTTC 
    ATCACCCTCT GTAAAGAACT CAGAAGGATT AAAGTGGCTT GCTTGAAAGG 
    TGAGCAGAGA GTTAGACGGC CATGGTGGGC ACCGTCTTGT CTATCCGTAG 
    TCTTTGTTAA GGCAGCCAAA CGCAACCGAC AGTCTCGTGT TGTATCTCTC 
    AAGCTTGAAT CTTGACATTA CACTTTGGCT GTTTATGTAC GTACTTGTCT 
    CTCTTCTCTT CTCTTGTTTT CTTTTCCTTT TTTTTTTTTT TTTGGTTTGG 
    GTTTGTTTGT GGCACATGCA CTAGGAAGAA ACAAACTCAA GTCAAAAAAG 
    CTGTTTGGCT TGGTGAAATC TTGCAAGCGG GAAAAAAATT ATGCGTTTTG 
    TACTTTGGTG GTGTATACAA AGCTTGCTCT CAGATGTTTA ATATATGGCT 
    TGT

    Gene models with high sequence identity

    1. AT3G07760.2 [+] show detail - Sterile alpha motif (SAM) domain-containing protein
      E-value: 0; Score: 99.73

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Sterile alpha motif homology 1.8e-14
    ProfileScan Sterile alpha motif 11.501
    Coil coiled-coil 0
    HMMPfam Sterile alpha motif, type 2 1.2e-07

    See the detailed result >

    AT3G07760.2

    Model type
    Protein coding
    Short Description
    Sterile alpha motif (SAM) domain-containing protein
    Computational Description
    Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 2 (InterPro:IPR011510); Has 60 Blast hits to 60 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR