F24628

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24628

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24628

Determination of introduced cDNA(s)

  • RAFL09-68-F06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-68-F06 - Resource: pda06614

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-68-F06 - full reading 
    AGAATCACAC AAGCTTCACA ATGTCATCAT CATCATCAAC GACGACGAAC 
    ACAACAACAG AATCAGATTC ATCATCTCTA CCTACTCACA TCGGTAGATC 
    AAATTCCGAC GGAATCATCG ACACTACACC ATTTCTTCCT CCCACCGTTA 
    CAAGAACCAT AAGCGTAGAT GAAGAATCCA ATCCAATTCA TCGATCCGCT 
    AGACGACAAG GTCTAAGAGA AGCAGCGAGG TTCCTCCGTC ACGCTGGTAG 
    CCGGAGAATG ATGCGTGAAC CATCGATGCT CGTTAGAGAA ACCGCTGCTG 
    AGCAATTAGA AGAGAGACAA AGTGATTGGG CGTATTCTAA ACCTGTGGTG 
    TTTCTTGACA TTTTGTGGAA TCTTGCTTTT GTTGCCATCG GTGTTGCTGT 
    TCTGATACTT AGCCGTGACG AGAAGCCTAA TATGCCGTTG AGAGTTTGGG 
    TTGTTGGTTA TGGGATTCAA TGTTGGTTAC ATATGGCTTG TGTTTGTGTT 
    GAGTATAGGC GGAGGAGACG ACGACGTCAC CCGGAGGATG GTGGTGGTTC 
    TGGGTTGACG AATTCTTCGT CGCAGCAATA TGTTTCGTTA GCGCAATTGG 
    AGGATAGAGG AGAGACTAGT AATCCTGCGA AGCATCTTGA ATCAGCCAAT 
    ACGATGTTCT CATTCATCTG GTGGATAATT GGATTCTACT GGGTTTCTGC 
    AGGAGGCCAA ACACTATCTA GTGACTCTCC TCAGCTCTAT TGGCTGTGTA 
    TCATTTTTCT CGGTTTCGAT GTTTTCTTTG TTGTGTTCTG TGTTGCATTG 
    GCTTGTGTTA TCGGCCTTGC TGTTTGCTGT TGTCTTCCAT GTATAATTGC 
    AATTCTATAT GCTGTTGCCG ACCAGGAGGG AGCATCGAAG AACGACATAG 
    ATCAAATGCC GAAATTCAGA TTTACAAAAA CTGGCAATGT TGAAAAGCTC 
    TCAGGCAAAG CACGGGGAAT AATGACGGAA TGTGGAACAG ATTCACCTAT 
    TGAACGCTCG CTCTCTCCAG AAGACGCGGA ATGCTGCATC TGTCTCTGTG 
    AATATGAAGA TGGAGTTGAA CTTAGAGAAC TCCCTTGTAA CCATCACTTT 
    CATTGCACTT GCATCGATAA ATGGCTTCAT ATAAACTCAC GTTGCCCGCT 
    CTGCAAGTTT AACATCTTGA AGAACGCAAA CAACGAAGTC TAGTAAAATC 
    TGTTCTGGTT CTAGGATCAA TCCGAACGAA CCATCCCAGA CCAGAACGTT 
    TCAGATATAT GTAAACTCTG GTTCGTGTTT TAGTGTTGTG CAGTTAGAAA 
    CTCTAGTCCA TATCTCTTTC TCCTGATCTT CTATTACAAT GCGTCAATGC 
    GCCTATTGAT AGTATGTAGG AATAAATCGT TGGATTAGTC CTACTTTATT 
    TTTT

    Gene models with high sequence identity

    1. AT4G11680.1 [+] show detail - Zinc finger, C3HC4 type (RING finger) family protein
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CLEAVAGE AND POLYADENYLATION SPECIFICITY FACT 2.6e-26
    HMMPanther CLEAVAGE AND POLYADENYLATION SPECIFICITY FACT 2.6e-26
    superfamily RING/U-box 1.2e-13
    ProfileScan Zinc finger, RING-type 12.12
    HMMSmart Zinc finger, RING-type 3.3e-05
    HMMPfam Zinc finger, C3HC4 RING-type 2.4e-05
    Gene3D no description 1.3e-11

    See the detailed result >

    AT4G11680.1

    Model type
    Protein coding
    Short Description
    Zinc finger, C3HC4 type (RING finger) family protein
    Computational Description
    Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G12760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR