F24629

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24629

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24629

Determination of introduced cDNA(s)

  • RAFL07-08-H05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-08-H05 - Resource: pda01451

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-08-H05 - full reading
    ACGGTTCCTC GTTCGTCCTC TCCCGTCGTC TCTCCGCACT AAATTGATGG 
    GCACATCATC TGGGTCCAAT CTTCCTCACC AGATGCTACC TCCACGTCAG
    CAACTACAAA CATCTCTTTC GCTTGTATCT TCAGATCCCC ACTTGTCACG
    GTCTAATTCT GGCATTGTGC GTGAATCACC AGCTGAAAGT GCTAGCTCTC
    AAGAAACTTG GCCAACCTCA AAATCTATTA TGGGAAGGAA GACAGATAGC
    GGAAAGACAG GGCCTGACTC TCATGATCAA CATGTGATCC GCCATGTTTC
    CATTGCTGAT AAGGTATCGC TACGGGACAT AGCTAGAGAG AGACTTGACA
    TAGTCGCTGA GAGAATGCAT CGATTACCAG AAGAATATCT CGAGGAGTTA
    AAGAATGGTC TTAAGGCTAT CCTTGAAGGA AATGGTGCGC AGCCTATAGA
    TGAGTTTATG TTTCTGCAGA AGTTTGTCCA GACGAGATCT GATTTAACTT
    CAAAGACACT TGTCAGGGCT CACCGAGTGC AGCTTGAAGT TCTTGTGGTT
    ATAAACACTG GTATCCAAGC ATTCTTGCAC CCAAACATCA ATCTCTCTCA
    GTCATCACTC ATCGAGATCT TTGTGTACAA GAGATGCAGA AACATAGCTT
    GCCAAAACGA ACTCCCGGCT GATGGTTGTC CCTGTGAGAT ATGCGCTAAT
    AGGAAAGGCT TCTGCAACCT GTGCATGTGT GTGATATGTA ACAAGTTTGA
    CTTTGCAGTC AACACATGCC GCTGGATTGG CTGCGACGTG TGTTCTCATT
    GGACTCATAC GGATTGTGCT ATTAGGGATG GGGAGATTTC GATGGGAGTT
    TCTCCCAAGA GCGTATCTGG GATGGGAGAA ATGCTGTTCA AGTGTCGAGC
    GTGCAACCAT ACTTCTGAAT TGCTGGGGTG GGTGAAAGAT GTGTTTCAGC
    ACTGTGCACC AAACTGGGAT AGGGAATCTT TAATGAAGGA ACTTGACTTC
    GTTAGTAGGA TTTTCCGTGG AAGCGAAGAT ACAAGAGGCC GGAAACTCTT
    CTGGAAGTGT GAGGAGCTTA TGGAGAAGAT TAAAGGTGGA CTGGCTGAAG
    CAACAGCGGC CAAGTTGATA CTCATGTTTT TCCAAGAAAT TGAATTGGAC
    TCTCCAAAGA GCCTTGAAAG CGGAGAAGGT GGGGGTACGA TAGCACCTCA
    AGATGCATGC AACCGAATTG CTGAAGTTGT AAAGGAAACA CTGAGGAAAA
    TGGAGATAGT GGGTGAGGAA AAGACGAGGA TGTACAAGAA AGCGCGAATG
    GGGCTTGAGG AATGCGAGAG AGAGGTAGAA GAGAAAGCAA AGCAAGTGGC
    GGAACTGCAG ATGGAGAGGC AGAAGAAGAA ACAACAGATA GAAGAGGTGG
    AGAGGATAGT GAGGCTGAAG CAAGCAGAGG CAGAGATGTT TCAGTTAAAA
    GCAAACGAGG CAAAAGTGGA AGCAGAGAGA TTGGAAAGGA TTGTGAAAGC
    GAAAAAGGAG AAAACAGAAG AGGAATACGC AAGTAACTAT TTGAAACTGA
    GGCTGAGCGA GGCGGAGGCA GAGAAAGAGT ATCTGTTTGA AAAGATAAAA
    GAGCAGGAAA GTGGTGGGAA TGGTGGTGAA GCGTCACAAG CAGTGATGTA
    CTCAAAGATC AGAGAAATGC TGCATGGATA CAATGCATCG TCGCCAAGGG
    TAGATCCAAG ATCAAACCAG CGAAATCCTT TCAGATCCAA TCCTTAGATG
    TTTGTATTGT CTCTCTTTGT TTGTATTAAA AAAAAAATCC GAATCAATTA
    AGGTTGGATT TGTGTGTGAA GTATTGTGGT CTTTGTATTC AAATTTTGCA
    CATGATCGTC TATGTTGGGC CATAATGTTA TGCAAGCTTT GACAAAAAAA
    AAAAAAAAA

    Gene models with high sequence identity

    1. AT3G07780.1 [+] show detail - Protein of unknown function (DUF1423)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF1423, plant 1e-206
    FPrintScan Protein of unknown function DUF1423, plant 5.5e-88
    FPrintScan Protein of unknown function DUF1423, plant 5.5e-88
    FPrintScan Protein of unknown function DUF1423, plant 5.5e-88
    FPrintScan Protein of unknown function DUF1423, plant 5.5e-88
    FPrintScan Protein of unknown function DUF1423, plant 5.5e-88
    FPrintScan Protein of unknown function DUF1423, plant 5.5e-88
    FPrintScan Protein of unknown function DUF1423, plant 5.5e-88
    FPrintScan Protein of unknown function DUF1423, plant 5.5e-88
    HMMPanther MLP3.23 PROTEIN 8.4e-277
    HMMPanther VERNALIZATION-INSENSITIVE PROTEIN 3 8.4e-277
    Coil coiled-coil 0
    HMMPIR Protein of unknown function DUF1423, plant 0
    HMMSmart Zinc finger, PHD-type 0.00013

    See the detailed result >

    AT3G07780.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1423)
    Curator Summary
    Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.
    Computational Description
    OBERON1 (OBE1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Zinc finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT5G48160.2); Has 8996 Blast hits to 6188 proteins in 768 species: Archae - 88; Bacteria - 1159; Metazoa - 3345; Fungi - 619; Plants - 512; Viruses - 79; Other Eukaryotes - 3194 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR