F24631

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24631

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24631

Determination of introduced cDNA(s)

  • RAFL06-67-L21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-67-L21 - Resource: pda03280

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-67-L21 - full reading 
    CTCATAAGTC ATTATAATAG TTTCCCCCGG ATTGTTTTTT CTTTCTTTTT 
    GCTAATCATC ATCGGTTTCT TCTAATCAAA AAAAAAAACA AAAAAAAAAG 
    AGGGACTACG TTCGTACAAT CCCATCCTTG GTATGGATTT CTGGCCGGAG 
    TTTATGGCGA CCAGCTGGGG AAGAGAGTTC GTCGCCGGTG GTTTCGGTGG 
    CGTCGCCGGC ATCATCTCCG GCTACCCCTT GGACACCCTC AGAATTCGCC 
    AGCAACAGAG CTCGAAATCT GGATCTGCCT TCTCCATTCT CCGGCGGATG 
    CTCGCCATTG AGGGTCCCTC CTCTCTCTAC AGAGGCATGG CTGCGCCTTT 
    GGCCTCCGTC ACTTTTCAGA ATGCTATGGT ATTCCAGATA TACGCCATAT 
    TCTCTCGCTC TTTTGATTCC TCTGTTCCTC TGGTAGAGCC TCCTTCCTAC 
    AGAGGCGTTG CTCTTGGTGG TGTTGCCACC GGTGCTGTAC AGAGCCTCTT 
    GCTCACCCCT GTCGAGCTCA TCAAGATTCG TCTCCAGCTT CAGCAGACTA 
    AGTCTGGTCC CATCACCTTG GCCAAGAGCA TCCTTAGGAG ACAGGGCCTT 
    CAGGGGCTTT ACAGAGGCCT CACCATCACC GTGCTCCGAG ATGCTCCCGC 
    TCATGGCCTC TACTTCTGGA CCTATGAGTA CGTCAGAGAA AGGCTTCACC 
    CCGGCTGCAG AAAGACCGGA CAAGAAAACC TCAGGACCAT GCTCGTGGCT 
    GGTGGCCTTG CTGGAGTGGC CAGCTGGGTC GCTTGTTATC CTCTTGATGT 
    CGTCAAGACC AGACTCCAAC AAGGTCATGG GGCTTACGAG GGCATTGCCG 
    ATTGTTTTCG CAAGAGCGTC AAACAGGAAG GCTATACGGT TCTCTGGCGT 
    GGCCTCGGGA CTGCAGTTGC CAGGGCCTTT GTGGTCAACG GTGCTATCTT 
    TGCTGCTTAT GAGGTAGCCT TGCGGTGTCT ATTCAATCAA TCGCCATCCC 
    CAGATATTGT CACAGGAGAT TGAGTGAGTA AAGGGCAAAG AAGGTTCATT 
    AGTTGCAGTC TGGACCTGTG AATGTAGTTA ATATTAGCAC ATAGTTTGAG 
    ATGGATTTGG ATTGCATAGC ATTGGTCAAA CAAATCTGAC TCGCTTTAGG 
    GATCAGGCAG TTTACTAATC ACAGTTGATC ATAGAGACGT TCCAGAAATG 
    ATTACAAACC CCAAAGAAAA CAGATGAAAT GAAAATTCTG TTACCAAAAA 
    AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT1G79900.1 [+] show detail - Mitochondrial substrate carrier family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Mitochondrial substrate carrier 4.3e-68
    HMMPfam Mitochondrial substrate/solute carrier 6.3e-14
    HMMPfam Mitochondrial substrate/solute carrier 1.1e-19
    HMMPfam Mitochondrial substrate/solute carrier 1.8e-24
    FPrintScan Mitochondrial carrier protein 1.2e-07
    FPrintScan Mitochondrial carrier protein 1.2e-07
    FPrintScan Mitochondrial carrier protein 1.2e-07
    FPrintScan Mitochondrial carrier protein 1.2e-07
    ProfileScan Mitochondrial substrate/solute carrier 14.618
    ProfileScan Mitochondrial substrate/solute carrier 21.054
    ProfileScan Mitochondrial substrate/solute carrier 23.35
    HMMPanther MITOCHONDRIAL CARRIER PROTEIN-RELATED 6.8e-158
    HMMPanther Mitochondrial substrate carrier 6.8e-158

    See the detailed result >

    AT1G79900.1

    Model type
    Protein coding
    Short Description
    Mitochondrial substrate carrier family protein
    Curator Summary
    encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosol
    Computational Description
    BAC2; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT5G46800.1); Has 25782 Blast hits to 14100 proteins in 457 species: Archae - 0; Bacteria - 6; Metazoa - 10775; Fungi - 7497; Plants - 4679; Viruses - 6; Other Eukaryotes - 2819 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR