F24638

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24638

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24638

Determination of introduced cDNA(s)

  • RAFL11-06-D23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-06-D23 - Resource: pda10080

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-06-D23 - full reading 
    AAAAACATAT TGTTTAACAT TCCTAAATAA ATGAAAATCA AACATATCAT 
    AGAAATTTAA TAAAATAAAT GGCACCAACT CAAAACACAA TCTGTTCGAA 
    ACACGTGGCA GTGATTGGAG CCGGAGCTGC CGGTCTCGTA ACGGCTAGGG 
    AACTTCGTCG TGAAGGTCAC ACTGTCGTTG TCTTTGACCG GGAAAAACAA 
    GTGGGAGGTC TCTGGAACTA CTCATCTAAA GCTGACTCTG ACCCGCTTAG 
    CCTCGACACA ACCCGAACCA TAGTCCACAC GAGCATCTAC GAGTCTCTCC 
    GAACCAACCT CCCGAGAGAA TGTATGGGTT TTACGGACTT TCCTTTCGTG 
    CCACGCATTC ATGACATCTC GAGAGACTCG AGACGGTATC CGAGTCACAG 
    AGAAGTTCTT GCGTATCTTC AAGACTTTGC TAGAGAGTTT AAAATAGAGG 
    AGATGGTCCG GTTCGAGACA GAGGTGGTTT GTGTTGAGCC GGTTAACGGG 
    AAATGGAGTG TCCGGTCCAA GAATTCCGTT GGTTTCGCCG CCCATGAAAT 
    CTTTGATGCC GTCGTTGTTT GTAGTGGTCA CTTTACAGAA CCTAACGTTG 
    CTCATATTCC TGGGATAAAA TCGTGGCCAG GAAAGCAGAT CCATAGCCAC 
    AACTACAGAG TTCCTGGTCC ATTCAATAAC GAGGTAGTGG TGGTGATCGG 
    AAATTATGCG AGCGGTGCTG ATATTAGTAG GGATATAGCT AAGGTCGCGA 
    AAGAAGTTCA CATTGCCTCT AGAGCGAGTG AATCTGATAC GTACCAGAAG 
    CTTCCAGTGC CCCAAAACAA TCTATGGGTT CATTCCGAGA TAGACTTCGC 
    CCATCAGGAT GGATCCATTC TTTTCAAAAA TGGGAAGGTG GTATATGCTG 
    ATACCATTGT GCATTGCACT GGGTACAAAT ATTACTTTCC ATTTCTTGAA 
    ACCAATGGCT ATATAAACAT TAATGAAAAC CGCGTCGAAC CTCTATACAA 
    GCATGTCTTT CTACCCGCGC TAGCCCCCAG TCTTTCTTTC ATCGGTTTAC 
    CTGGAATGGC CATACAATTC GTTATGTTTG AAATTCAAAG CAAATGGGTG 
    GCTGCAGTCT TGTCCGGACG AGTTATACTT CCCTCGCAAG ACAAGATGAT 
    GGAAGATATT ATTGAGTGGT ATGCAACGCT TGATGTGTTA GGAATTCCCA 
    AAAGACATAC GCATAAATTG GGTAAAATTT CGTGTGAGTA CCTCAACTGG 
    ATCGCGGAAG AATGTCATTG TTCGCCAGTT GAAAATTGGA GAATTCAAGA 
    AGTTGAGCGT GGATTCCAGA GAATGGTCTC CCACCCAGAA ATTTACCGCG 
    ATGAATGGGA TGATGATGAT CTTATGGAAG AAGCGTACAA GGATTTTGCT 
    AGGAAGAAGT TAATTAGTTC TCATCCTTCT TATTTCCTCG AATCATGATG 
    ATGATCTGCG ACAAATATTG TCCAAAAATT AAAAATCGCT TGTTTCGTTC 
    TTTCT

    Gene models with high sequence identity

    1. AT1G65860.1 [+] show detail - flavin-monooxygenase glucosinolate S-oxygenase 1
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR23023:SF4 0
    Gene3D G3DSA:3.50.50.60 6.19996040581158e-98
    HMMPanther PTHR23023 0
    HMMPfam Flavin-containing monooxygenase-like 6.19999999999994e-36
    HMMPfam Flavin-containing monooxygenase-like 0.00000000000063
    FPrintScan Flavin-containing monooxygenase FMO 8.80000265836278e-23
    FPrintScan Flavin-containing monooxygenase FMO 8.80000265836278e-23
    FPrintScan Flavin-containing monooxygenase FMO 8.80000265836278e-23
    FPrintScan Flavin-containing monooxygenase FMO 8.80000265836278e-23
    FPrintScan Flavin-containing monooxygenase FMO 8.80000265836278e-23
    FPrintScan Flavin-containing monooxygenase FMO 8.80000265836278e-23
    superfamily SSF51905 7.5e-49

    See the detailed result >

    AT1G65860.1

    Model type
    Protein coding
    Short Description
    flavin-monooxygenase glucosinolate S-oxygenase 1
    Curator Summary
    belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates
    Computational Description
    flavin-monooxygenase glucosinolate S-oxygenase 1 (FMO GS-OX1); CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: flavin-monooxygenase glucosinolate S-oxygenase 2 (TAIR:AT1G62540.1); Has 13357 Blast hits to 12951 proteins in 1760 species: Archae - 39; Bacteria - 7207; Metazoa - 1086; Fungi - 1434; Plants - 770; Viruses - 0; Other Eukaryotes - 2821 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR