F24649

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24649

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24649

Determination of introduced cDNA(s)

  • RAFL06-80-B19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-80-B19 - Resource: pda03774

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-80-B19 - full reading 
    ACAAATTAAA GAAGCAGAAA CAAAAACAAG TAAAACAGAA ACAATCAACA 
    CAGAGAAACC ACCTGTTTGT TCAAGATCAA AGATGTCTAT AAATATAAGA 
    GACCCTCTTA TAGTAAGCAG AGTTGTTGGA GACGTTCTTG ATCCGTTTAA 
    TAGATCAATC ACTCTAAAGG TTACTTATGG CCAAAGAGAG GTGACTAATG 
    GCTTGGATCT AAGGCCTTCT CAGGTTCAAA ACAAGCCAAG AGTTGAGATT 
    GGTGGAGAAG ACCTCAGGAA CTTCTATACT TTGGTTATGG TGGATCCAGA 
    TGTTCCAAGT CCTAGCAACC CTCACCTCCG AGAATATCTC CATTGGTTGG 
    TGACTGATAT CCCTGCTACA ACTGGAACAA CCTTTGGCAA TGAGATTGTG 
    TGTTACGAAA ATCCAAGTCC CACTGCAGGA ATTCATCGTG TCGTGTTTAT 
    ATTGTTTCGA CAGCTTGGCA GGCAAACAGT GTATGCACCA GGGTGGCGCC 
    AGAACTTCAA CACTCGCGAG TTTGCTGAGA TCTACAATCT CGGCCTTCCC 
    GTGGCCGCAG TTTTCTACAA TTGTCAGAGG GAGAGTGGCT GCGGAGGAAG 
    AAGACTTTAG ATGGCTTCTT CCTTTATAAC CAATTGATAT TGCATACTCT 
    GATGAGATTT ATGCATCTAT AGTATTTTAA TTTAATAACC ATTTTATGAT 
    ACGAGTAACG AACGGTGATG ATGCCTATAG TAGTTCAATA TATAAGTGTG 
    TAATAAAAAT GAGAGGGGGA GGAAAATGAG AGTGTTTTAC TTATATAGTG 
    TGTGATGCGA TAATTATATT AATCAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT1G65480.1 [+] show detail - PEBP (phosphatidylethanolamine-binding protein) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Phosphatidylethanolamine-binding protein PEBP 1e-59
    superfamily Phosphatidylethanolamine-binding protein PEBP 5.7e-54
    PatternScan Phosphatidylethanolamine-binding, conserved site 0
    HMMPfam Phosphatidylethanolamine-binding protein PEBP 4.8e-24
    HMMPanther PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 2.2e-58

    See the detailed result >

    AT1G65480.1

    Model type
    Protein coding
    Short Description
    PEBP (phosphatidylethanolamine-binding protein) family protein
    Curator Summary
    FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1.
    Computational Description
    FLOWERING LOCUS T (FT); FUNCTIONS IN: phosphatidylethanolamine binding, protein binding; INVOLVED IN: photoperiodism, flowering, positive regulation of flower development, regulation of flower development; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: PEBP (phosphatidylethanolamine-binding protein) family protein (TAIR:AT4G20370.1); Has 2182 Blast hits to 2182 proteins in 306 species: Archae - 0; Bacteria - 0; Metazoa - 594; Fungi - 140; Plants - 1404; Viruses - 3; Other Eukaryotes - 41 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR