F24710

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24710

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24710

Determination of introduced cDNA(s)

  • RAFL09-48-H04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-48-H04 - Resource: pda06387

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-48-H04 - full reading 
    ATAAGCGCCA TTGCAGCGGG CTTACGAAAA CTTTTAAGAA AACTTCTGGA 
    AGCGGAAAGC GGACCTCCGA CGAAATTTCC AAGGCTACGA CGGGCCGCGC 
    GCGGGTTATT TGGGCTTTCT CAGTTCAAAC CTTTGAGTTA CCCGCTCTCT 
    CTTCTTGCTC CAATCAATCT TCAGTCCACA AAATCTGAAA TCCACTTTAT 
    CTATTTTAGA TTATTAGGTT CACTCACCAT TTTCATGGCA AAACCAAAAT 
    CCAATTCTCA TCTCTCGTGG CAGGATTACT TGAAAACTGT TGCCCCCACT 
    CAGATTTTGT CTGAACGAGG AGCTAATCTC GTTGTCATCA ACTTAGGGTC 
    TGCTAATGTA AGAGTAGGAT TGGCTATGGA TGAGAAACCT TTCAATGTTC 
    CTAATTGTAT TGCAAGATAC ATTACACAAT CTGGGAAACC AACTGTTGTT 
    GATCAGATGC TTAACACTGA GGTCACTACT AATCAACATG TTGACCGTGA 
    GAGAGCTTAT AATTCTGCGG CATCGCTGTT GAAGATACTG TTCCTGGATG 
    AAAGTTCTTC TTCTGGCTCT GCATCTCGCA AGATGGGGAG GATCGACGGA 
    TACAATCAAG CGAGTACGAT AAAGAAAGAT TCAGTCTTTA CTTGGACTGA 
    TGTGTATGAG GATGAGAAAA TTTCTCTTGC CTCACCAGCA GAAACTTCTC 
    CTGATAAAGG TGATGCTAGT GCATCTGAAG CTGTTCCTGA TGTTACTGAC 
    TCTAAAGATA CTAGTGAGAG TAAACGCAAG TATAGGAAAA TGATTTTTGG 
    TGAAGAAGCT TTGAAAATAT CGCCAAAAGA GCCATATTGT TTATACCATC 
    CTATTCGGAG AGGTCACTTC AATGTTTCGC CACATTATTC AGCGCAACGG 
    GTTTGTGAGG ACTTAACTGC TATCTTGGAC TGGATTTTAT TAGAGAAACT 
    TCATATAACT CACAAGGAGA GATTCTCTTT TCATGCTGTT ATTGTTGTCC 
    CAGAAACATT TGACACCCGC GAAATAAAGG AAATGCTAAC TATTGTGTTG 
    GGAGAGCTAT ACTTTAACTC AGCAGTTGTC CACCAAGAAG GTCTATCGGC 
    CGTTTTTGGG AATGGTTTGA CAACAGCTTG TATTGTGAAT ATAGGAGCCC 
    AGACAAGTAC AGTAGTTTGT GTCGAGGATG GGGTCTCATT GCCAAATACT 
    GAAAAGATTT TACCTTTTGG AGGAGAGGAT ATATGTAGAT GCCTTCTATG 
    GATTCAGAGG CATTACCAAA AGTGGCCACA AATCAACACA GATGTTTTGG 
    CAAAGCCAAT CGATATGCTG ATGCTTAATC AACTTAAGGA GTCATTTTGT 
    GAAATTAGAG CAGGAGAACT TGAAACTGTT GCAACGGTTC ATTCTTATGA 
    GGAAGGCATG CCAGCTGTGC CTCACAAGAC AAATCTCACC TCCCTTAACG 
    TTCCACCAAT GGGTCTGTTT TATCCTAACC TTTTGGTCCC TGAAATATTT 
    CCCCAGCCAC CACGTCAATG GTTTCAAGAC TACGAGAATA TGTTGGAAGA 
    CACTTGGAAC ATGGACTTTG GAGGTGGTGG TAACATGGGA TTACCAATGT 
    GGGATAGTTT TGCATTTTCG CCTTCAAAAC CAAAGAAAGA AGAGAAGATT 
    GGTCTCGCTG AAGCCATTAC AAGCAGCATT CTCTCTGCTG GACGCATAGA 
    CCTTAGACGG AAGCTTTTCT CCAGCATTCA ATTGATTGGT GGTGCTGGTT 
    TGACGAAAGG TCTTGTAGCG GCAGTGGAAG AAAGAGTTCT TCACGCGATA 
    CCTCCAACTG AAGCCATTGA TACAGTGCAG GTTCTGCCAT CAAGAACGGA 
    GCCACAATTC GTAACTTGGA AAGGAGGAGC GATATTGGGA ATTCTGGACT 
    TTGGGAGGGA GGCTTGGATT GAGAGACATC AATGGATGGT AAATGGGGTT 
    AATAAAGGTG GTCTAAAGAA GTACAAAGAC TCTTATCACC TTCAAGGTCA 
    AGCAATGTAC TTCATCAACC CCTAGTTTCT GTCTATATCT TAAGCTTTCT 
    CTGTTTCTTA TCAGAATACT TTTACTTGTC ATAACTCAAA ACCAAAAACA 
    AAAATTCTCA GAGTAAATGT TATTTTGCC

    Gene models with high sequence identity

    1. AT5G43500.1 [+] show detail - actin-related protein 9
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ACTIN-RELATED PROTEIN 6, ARP6 2e-145
    HMMPanther Actin/actin-like 2e-145
    HMMSmart Actin/actin-like 2.1e-09
    HMMPfam Actin/actin-like 2.1e-24
    Gene3D no description 4.6e-09
    superfamily Actin-like ATPase domain 5.4e-34
    superfamily Actin-like ATPase domain 7.8e-15

    See the detailed result >

    AT5G43500.1

    Model type
    Protein coding
    Short Description
    actin-related protein 9
    Curator Summary
    encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.
    Computational Description
    actin-related protein 9 (ARP9); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR