F24831

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24831

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24831

Determination of introduced cDNA(s)

  • RAFL06-09-F19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-09-F19 - Resource: pda09370

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-09-F19 - full reading
    AGCTACACAC GAGAAAGAAA AAGCTCACAA CTTTAACCTT TCTGGAGAGA 
    GAAGAACAAA AGAGGGAGAG GGAGAGAAAT GGAAGGCAAA GAAGAAGATG
    TACGAGTGGG AGCTAACAAG TTCCCGGAGA GGCAACCCAT CGGTACATCG
    GCTCAGTCCA CCGACAAGGA CTACAAAGAG CCACCTCCTG CGCCACTGTT
    CGAGCCCGGC GAGCTCAGCT CATGGTCTTT CTACAGAGCC GGAATAGCTG
    AGTTTATCGC TACTTTCTTG TTTCTCTACA TCACTGTTTT GACTGTAATG
    GGAGTTAAGA GAGCACCAAA CATGTGTGCT TCTGTTGGAA TCCAAGGTAT
    CGCTTGGGCT TTTGGTGGCA TGATCTTTGC TCTTGTCTAC TGTACTGCTG
    GAATTTCAGG TGGACACATC AACCCTGCTG TAACATTCGG TCTGTTCTTG
    GCTCGGAAGT TATCTCTGAC CAGAGCAGTG TTCTACATGA TTATGCAATG
    TCTTGGAGCC ATCTGTGGTG CCGGAGTCGT CAAAGGTTTC CAGCCAACGC
    CGTACCAGAC TCTCGGTGGT GGTGCTAACA CCGTTGCTCA TGGCTACACC
    AAAGGTTCTG GCCTTGGTGC TGAAATCATC GGAACATTCG TTCTCGTCTA
    CACTGTCTTC TCCGCCACCG ACGCCAAGAG AAGCGCCCGT GACTCACACG
    TCCCGATTTT GGCGCCGCTC CCAATCGGAT TTGCAGTGTT CTTGGTACAC
    TTGGCAACAA TACCGATCAC CGGGACCGGA ATCAACCCAG CTAGAAGTCT
    TGGAGCCGCA ATTATCTACA ACAAGGACCA CTCTTGGGAT GACCATTGGA
    TTTTCTGGGT TGGACCATTC ATTGGAGCAG CTCTAGCAGC ACTATATCAC
    CAGATTGTCA TCAGAGCGAT TCCTTTCAAG AGCAAGAGTT AGAGACACAC
    AGAAAGATTC CACGGTCCAG AATTTGTTCT TTAGTAGTTT CTTTGCTTAT
    CTATCTAATG TAGCTTGTGT TTTGCAATGT AATGAGCCTT TCAAGAATAT
    GTATTTGGGA TTTCTAATCA GCTTTTGTCT ATG

    Gene models with high sequence identity

    1. AT4G00430.1 [+] show detail - plasma membrane intrinsic protein 1;4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Major intrinsic protein 1.9e-85
    FPrintScan Major intrinsic protein 7.7e-71
    FPrintScan Major intrinsic protein 7.7e-71
    FPrintScan Major intrinsic protein 7.7e-71
    FPrintScan Major intrinsic protein 7.7e-71
    FPrintScan Major intrinsic protein 7.7e-71
    FPrintScan Major intrinsic protein 7.7e-71
    superfamily Major intrinsic protein 1.2e-60
    PatternScan Major intrinsic protein, conserved site 0
    Gene3D Major intrinsic protein 6.8e-64
    HMMPanther AQUAPORIN-RELATED 4e-197
    HMMPanther Major intrinsic protein 4e-197
    HMMTigr Aquaporin 3.2e-98

    See the detailed result >

    AT4G00430.1

    Model type
    Protein coding
    Short Description
    plasma membrane intrinsic protein 1;4
    Curator Summary
    a member of the plasma membrane intrinsic protein subfamily PIP1.
    Computational Description
    plasma membrane intrinsic protein 1;4 (PIP1;4); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1B (TAIR:AT2G45960.1); Has 10702 Blast hits to 10683 proteins in 2216 species: Archae - 88; Bacteria - 5147; Metazoa - 1472; Fungi - 442; Plants - 2512; Viruses - 2; Other Eukaryotes - 1039 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR