F24835

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24835

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24835

Determination of introduced cDNA(s)

  • RAFL06-08-K09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-08-K09 - Resource: pda02897

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-08-K09 - full reading 
    TGACTCTCTC TGCGTCCAAA TTTTGATCTT TGTTCTTCTC AAAGCGAATA 
    TGGTTTTCAA GGTTTCTACC GTATCCACAT CTCCTATTGA TGGCCAGAAA 
    CCAGGAACTT CTGGTCTTCG TAAGAAGGTG AAAGTGTTCA AGCAACCCAA 
    TTATCTAGAG AATTTTGTCC AAGCAACATT CAATGCTCTT ACGGCGGAGA 
    AAGTTAAAGG TGCCACACTT GTGGTCTCTG GTGATGGTCG TTATTACTCA 
    AAGGATGCTG TTCAGATCAT AATTAAGATG GCAGCAGCTA ATGGTGTACG 
    ACGTGTGTGG GTTGGTAAAA ACACTCTGTT ATCAACTCCT GCTGTATCAG 
    CTGTGATTCG TGAAAGATCA GGGGCTGATG GATCGAAAGC AACTGGAGCA 
    TTTATCTTAA CAGCAAGCCA CAATCCTGGT GGCCCTACTG AGGATTTTGG 
    AATCAAATAC AATATGGAAA ATGGAGGACC TGCTCCTGAA TCAATCACTG 
    ATAAAATTTA CGAGAACACT AAGACAATCA AGGAGTACCC AATAGCACAA 
    GATCTACCCA ATGTTGATAT TTCTGCTGTT GGTGTAACCA GTTTTGAAGG 
    ACCTGAAGGA AAATTTGATG TTGAAGTTTT TGATCCCGCA GATGACTACG 
    TTAAATTAAT GAAGTCAATC TTCGATTTTG AAGCCATCCG GAAATTGCTA 
    TCATCTCCAA AGTTTACATT CTGCTATGAT GCATTGCATG GAGTTGCTGG 
    AGCCTATGCA CATCGCATCT TTGTCGAAGA ACTCGGTGCG CAAGAAAGCG 
    CATTATTGAA CTGCACTCCC AAGGAGGACT TTGGAGGAGG GCATCCGGAT 
    CCCAATTTGA CCTATGCTAA GGAGCTTGTG GCACGAATGG GATTAGGTAA 
    ATCCGACACT GGAGGTGAAC CTCCAGAGTT TGGCGCCGCT GCTGATGGTG 
    ATGCAGACCG TAACATGATC CTTGGTAAAA GGTTCTTTGT AACTCCTTCG 
    GATTCAGTTG CCATAATTGC TGCAAATGCT ATTGGTGCCA TCCCGTACTT 
    CAGCTCTGGT TTGAAAGGTG TTGCAAGGAG CATGCCAACC TCAGCTGCTC 
    TTGATGTCGT TGCAAAAAGC TTGAATTTGA AGTTCTTTGA GGTTCCAACA 
    GGCTGGAAGT TTTTTGGTAA TCTGATGGAT GCTGGGATGT GTTCTGTTTG 
    TGGAGAAGAA AGTTTTGGAA CTGGCTCGGA TCATATCCGT GAGAAAGACG 
    GAATATGGGC AGTTCTTGCA TGGATGTCTA TACTTGCTCA CAAGAACAAG 
    GGAAATATTG ACGGTAACGC TAAACTGGTG TCAGTTGAAG ACATTGTCCG 
    CCAGCATTGG GCTACCTACG GTCGTCACTA TTACACTCGT TACGACTATG 
    AGAATGTAGA CGCAGGTAAA GCTAAGGAAC TGATGGAGCA TTTGGTCAAA 
    TTGCAATCTT CAATTCCTGA AGTTAACAAG ATTGTGAAAG GAATTCGTTC 
    GGACGTGGCA AGCGTCGCCA GTGCTGATGA ATTCGAGTAC AAAGATCCAG 
    TTGATGGATC CATTTCGAAG CACCAGGGAA TCCGTTACTT GTTTGAAGAC 
    GGATCACGAC TTGTTTTCCG TCTCTCTGGA ACTGGCTCAG AAGGAGCAAC 
    CATCCGGCTT TACATCGAAC AGTACGAAAA GGATGCTTCA AAAACCGGCC 
    GAGAATCCCA GGAAGCTTTG TCTCCTCTGG TTGACTTAGC TCTAAAGCTG 
    TCGAAGATGG AAGAGTTCAC AGGCCGATCA GCCCCCACCG TCATAACATA 
    AGAAGGGTCA AGCTCAACGA CTCAAACCAT TCACCTTTTC GTCTATATGA 
    TGTTTTCTTC TTATACTATC CAAGTTACAT TATAAGAATA ATTAGTCTCA 
    GGGAGAATTT GTATTTCTCA TCAGAATTCT GAACAACCAA GACTGATTTC 
    TTGAGTTGTT GTGAGGCTTA TACTTGTACG GATTTGGCTT TCTCAGTTTT 
    GTTCTCTCTT GTTTCCGTAT TTTGGCGAGT ATACTCTCTT AACAT

    Gene models with high sequence identity

    1. AT1G23190.1 [+] show detail - Phosphoglucomutase/phosphomannomutase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 3.4e-58
    Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 5.2e-42
    Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 6.9e-37
    Gene3D no description 3.6e-61
    HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain I 2.5e-36
    HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain III 6e-26
    HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain II 1.4e-13
    HMMPfam Alpha-D-phosphohexomutase, C-terminal 2.3e-11
    superfamily Phosphoglucomutase, C-terminal domain 1.7e-54
    superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 4.1e-53
    superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 3.6e-40
    superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 2.3e-37
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 3.2e-22
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 3.2e-22
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 3.2e-22
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 3.2e-22
    PatternScan Alpha-D-phosphohexomutase, conserved site 0
    HMMPanther PHOSPHOGLUCOMUTASE 2.9e-224
    HMMPanther PHOSPHOHEXOMUTASE FAMILY MEMBER 2.9e-224

    See the detailed result >

    AT1G23190.1

    Model type
    Protein coding
    Short Description
    Phosphoglucomutase/phosphomannomutase family protein
    Curator Summary
    Encodes a cytosolic phosphoglucomutase (PGM). Two Arabidopsis PGM proteins (AT1G70730/PGM2 and AT1G23190/PGM3) have high sequence similarities and redundant functions. Mature plants possessing a single cPGM allele had a major reduction in cPGM activity. Whereas pgm2 and pgm3 single mutants are undistinguishable from the wild type, loss of both PGM2 and PGM3 severely impairs male and female gametophyte development.
    Computational Description
    Phosphoglucomutase/phosphomannomutase family protein; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, magnesium ion binding, phosphoglucomutase activity; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: cytosol, nucleus, plasma membrane, chloroplast, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: Phosphoglucomutase/phosphomannomutase family protein (TAIR:AT1G70730.3); Has 7107 Blast hits to 7096 proteins in 2124 species: Archae - 111; Bacteria - 5258; Metazoa - 510; Fungi - 209; Plants - 166; Viruses - 0; Other Eukaryotes - 853 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR