F24926

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24926

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24926

Determination of introduced cDNA(s)

  • RAFL06-70-G15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-70-G15 - Resource: pda03345

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-70-G15 - full reading 
    ATCCAAAACA TAATTAGTAT AACGATACTA CTACTAACCG ACTGGACTAG 
    ATTATTCTAC TTGATATATC CTCTCGAGAA CTATTGCTGC CGCTACTCGT 
    TTCATATCTC CGTCTCCGGC TCGATCCGCC AAGTAGAGTA AGCAGCAATG 
    ACTAAAAAGA AGAATCCTAA TGTTTTCTTG GATGTATCAA TTGGTGGGGA 
    TCCCGTTCAA CGGATTGTCA TTGAGCTTTT TGCTGATGTT GTCCCCAAGA 
    CAGCGGAAAA CTTCCGTGCC CTCTGCACAG GTGAGGCGGG CGTTGGAAAG 
    TCCACTGGGA AGCCTCTACA TTTCAAAGGA TCATCTTTCC ATCGGGTTAT 
    CAAAGGATTC ATGGCTCAGG GTGGTGATTT TTCCAATGGG AATGGCACTG 
    GTGGGGAGAG CATCTATGGT GGGAAGTTTT CAGATGAGAA CTTTAGATTG 
    GACCATGATG GAGCTGGAGT CCTTTCAATG GCAAATTGTG GCCCAAATAC 
    CAACGGGTCC CAATTTTTTA TACTTTTTAA ACGCCAACCA CATCTTGATG 
    GGAAGCATGT TGTATTTGGC AAAGTCGTTG AAGGGATGGC AGTAATCAAG 
    AAAATGGAAC TTGTGGGGAC GAGTGATGGG AAACCTACTA GCCCAGTCAA 
    AATAATAGAC TGTGGTGAAA CGTCTCAGAT AAGAGCACAT GATGCTGCTG 
    AAAGAGAAAA AGGGAAATCG AAAAAATCAA ACAAGAACTT TTCTCCTGGT 
    GACGTATCTG ACCGTGAAGC TAAGGAGACA CGCAAAAAAG AATCTAACGA 
    GAAAAGGATA AAACGAAAAA GAAGATACTC TTCGTCAGAT TCATATAGCT 
    CAAGTTCCGA CTCAGATTCA GATTCGGAAT CAGAAGCATA TTCATCTTCC 
    TCCTATGAGT CTAGTTCTTC CAGTGATGGG AAGCATAGGA AGAGGAAGTC 
    AACAACAAGA CACAAAGGCC GACGCGGGGA AAGAAAGAGT AAAGGACGAA 
    GCGGGAAAAA GAAAGCTCGG CCAGATAGAA AACCAAGCAC GAATAGTTCA 
    AGTGACACGG AGAGTAGCAG CAGTTCTGAT GATGAGAAAG TGGGCCACAA 
    AGCCATAAAG TCAGTGAAAG TTGATAACGC TGATCAACAC GCCAACTTGG 
    ATGACTCAGT GAAATCAAGG AGCAGGAGCC CAATTCGTAG GAGAAACCAA 
    AACAGCAGGA GCAAAAGTCC TAGTAGGAGC CCTGTGAGAG TTCTTGGAAA 
    TGGAAACAGA AGTCCTAGTA GGAGCCCTGT GAGAGATCTT GGAAATGGAA 
    GCAGAAGTCC TCGTGAGAAG CCAACAGAGG AAACTGTGGG GAAATCTTTC 
    AGAAGCCCAT CTCCAAGTGG TGTGCCCAAG CGCATCCGAA AGGGGCGTGG 
    GTTCACCGAA CGCTATTCCT TTGCTCGGAA GTACCATACT CCTTCTCCTG 
    AGCGTTCTCC TCCTAGACAT TGGCCTGACA GAAGAAACTT TCAGGATAGG 
    AACAGGGATA GGTATCCGAG CAACAGAAGT TACTCTGAGC GCTCACCGAG 
    GGGACGCTTT AGAAGCCCAC CCAGAAGAAG GAGCCCTCCA AGGTACAACC 
    GGAGGAGAAG GAGCACTTCT CGGAGTCCAG ATGGGTACCG TAGACGATTG 
    AGAGACGGAA GCAGGAGCCA GAGTCCGAGG CATCGTAGCC GTAGCCAGAG 
    CCCTAGAAAG AGGCAGCCAA TTAGCCAAGA CCTGAAATCC CGTCTCGGGC 
    CACAGAGATC CCCCATCAGA GGAGGACGCA CCTCTCCTGC AGAATCACTC 
    AGCCCCTTCT CACTCACCTT CTCCACCAGG AAAGAGAGGT CTGGTTAGCT 
    ATGCGGATTG ATGGTCACTC TCATCCATTG GTTTCTCTGC TGACTTGCGA 
    GTTTTTGTTT TAATTTCCGT GTTTTAGTGC AAGCAATAAT AGGTAATGAT 
    ATTTTTTATG TTGGTCGGAT ATATAATACT CTACCTTAGT TGCATTATTA 
    CAGATCGTGG AACATTGATC AAATTGAGAC TGATATATGT TGGCAGAATT 
    GAGTTTGGGA ATCGAAGTTT GTAGAAAATT TATTGAAAAA AAAAAAAAAA 
    A

    Gene models with high sequence identity

    1. AT3G63400.1 [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 43.541
    Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 5.1e-65
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 7.6e-35
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 7.6e-35
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 7.6e-35
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 7.6e-35
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 7.6e-35
    HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 7.2e-47
    HMMPanther CYCLOPHILIN 2.5e-171
    HMMPanther CYCLOPHILIN 2.5e-171
    PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0
    superfamily Cyclophilin-like 1.6e-72

    See the detailed result >

    AT3G63400.1

    Model type
    Protein coding
    Short Description
    Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
    Computational Description
    Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1); Has 55912 Blast hits to 37431 proteins in 3034 species: Archae - 126; Bacteria - 11048; Metazoa - 23197; Fungi - 5408; Plants - 3603; Viruses - 370; Other Eukaryotes - 12160 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR