F24950

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24950

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24950

Determination of introduced cDNA(s)

  • RAFL04-09-P15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-09-P15 - Resource: pda00545

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-09-P15 - full reading 
    ATCTCTCTCT CTTTCCGTCT TCATCGTCCT CCCGGCTTCT GCGATTTTGT 
    TTAGTAGCGC CGGACCGGAG TAGTTAAAAC CCTAGCCCAG TCTATTTAAA 
    GATTCACCGA GTAGTCTTCT AGTCCTGCGT ATACTTCTTC TTCTTCGTTT 
    ATACTTAGAA GATGAATTGT GCAATTTCCG GCGAAGTTCC GGAGGAGCCT 
    GTGGTTTCTA AGAAGTCGGG TTTGCTTTAC GAGAAGCGGC TAATCCAGAC 
    GCATATATCC GATTATGGGA AATGCCCGGT TACTGGTGAG CCACATACTC 
    TTGATGACAT TGTTCCCATC AAAACTGGGA AGATCGTAAA GCCGAAACCA 
    TTACACACAG CTAGCATCCC TGGATTGCTT GGAACGTTTC AGACTGAATG 
    GGACAGTTTG ATGCTATCAA ATTTTGCTTT GGAACAACAA CTGCATACTG 
    CGAGGCAAGA GCTAAGTCAC GCTTTGTATC AGCATGATGC TGCTTGTCGT 
    GTGATTGCTA GGCTTAAAAA AGAAAGAGAC GAATCACGAC AATTGCTTGC 
    AGAGGCTGAA AGGCAGTTGC CTGCAGCCCC CGAAGTTGCC ACATCGAATG 
    CTGCTCTTAG TAATGGTAAA CGAGGTATCG ATGATGGTGA GCAGGGGCCT 
    AATGCAAAGA AAATGCGTCT TGGAATTTCG GCTGAAGTTA TCACAGAACT 
    CACAGATTGT AATGCTGCTC TTTCTCAGCA GCGTAAAAAG AGACAGATCC 
    CTAAAACATT GGCTTCAGTC GATGCTCTGG AGAAGTTCAC CCAACTCTCA 
    AGCCACCCCC TTCACAAGAC CAACAAACCT GGAATTTTTT CAATGGACAT 
    CCTACATTCT AAGGATGTCA TCGCTACGGG AGGAATTGAT ACAACTGCCG 
    TTCTCTTTGA TCGTCCTTCA GGACAAATCT TATCAACGCT GACTGGTCAC 
    TCAAAGAAGG TTACAAGCAT CAAGTTCGTT GGTGACACTG ATCTTGTGTT 
    AACTGCTTCA TCCGACAAGA CAGTCCGCAT CTGGGGATGT TCCGAGGATG 
    GGAACTATAC CTCTAGACAT ACACTGAAAG ATCATTCTGC CGAGGTGCGA 
    GCTGTAACTG TCCACGCAAC GAATAAATAC TTTGTGTCAG CATCACTTGA 
    CAGTACATGG TGCTTCTATG ATCTGTCCTC CGGTTTATGC CTTGCTCAGG 
    TGACAGATGC TTCCGAAAAC GACGTGAATT ACACGGCTGC TGCTTTTCAT 
    CCTGATGGTC TCATTCTTGG AACTGGTACC GCTCAATCTA TTGTTAAGAT 
    TTGGGATGTA AAAAGTCAGG CAAATGTGGC AAAGTTTGGT GGACACAATG 
    GAGAAATCAC CTCTATATCA TTCTCTGAAA ACGGTTATTT CCTTGCGACT 
    GCTGCACTGG ATGGTGTTAG GTTGTGGGAC TTGCGCAAGT TAAAGAACTT 
    CCGAACCTTT GACTTTCCAG ATGCAAACTC GGTGGAGTTT GACCATAGCG 
    GATCTTATCT TGGCATTGCT GCTTCAGATA TAAGAGTATT CCAAGCAGCT 
    AGTGTAAAAG CAGAATGGAA CCCAATCAAG ACTCTTCCCG ATCTGTCCGG 
    TACAGGTAAA GCAACAAGTG TTAAGTTTGG ACTCGACTCC AAATACATAG 
    CAGTCGGTTC AATGGACCGT AATCTCAGGA TATTTGGTTT ACCTGATGAT 
    GACAATACTG AAGATTCAGC ACAAGATTCA TGAAGAGATA TCTCAAAAGT 
    CTCATCATCA AGAGTAGCTA TATCCTCAAT TCTCGCGATT TTTGTTGTAT 
    CTTTACAGTT CTGTTGGTAC TTTCCTGATG GCCCCTCTCA CAATCACATA 
    TACACACCTG AGCTCTCTCC CTTTCTTTCT CAGTCAACAA TTTTCCTGTA 
    ACAACATCGT ACCTTAAGGA TCTGCAGTTG ATCTTTCTCT CTCAAAAAAA 
    AAAAAAAAA

    Gene models with high sequence identity

    1. AT1G04510.1 [+] show detail - MOS4-associated complex 3A
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 7e-18
    Gene3D WD40/YVTN repeat-like-containing domain 3.1e-55
    HMMPanther PRE-MRNA SPLICING FACTOR PRP19 0
    HMMPanther PRE-MRNA SPLICING FACTOR PRP19-RELATED 0
    ProfileScan WD40 repeat 2 14.585
    ProfileScan WD40 repeat 2 9.071
    ProfileScan WD40 repeat 2 9.94
    ProfileScan WD40 repeat 2 10.408
    ProfileScan WD40-repeat-containing domain 34.539
    HMMPfam WD40 repeat, subgroup 5.2e-10
    HMMPfam WD40 repeat, subgroup 9.6e-05
    HMMPfam WD40 repeat, subgroup 0.098
    HMMPfam WD40 repeat, subgroup 5e-07
    HMMPfam WD40 repeat, subgroup 0.027
    HMMPfam Pre-mRNA-splicing factor 19 5.5e-31
    superfamily WD40 repeat-like-containing domain 1.3e-60
    Coil coiled-coil 0
    HMMSmart U box domain 2.1e-22
    HMMSmart WD40 repeat 3.3
    HMMSmart WD40 repeat 1.9e-08
    HMMSmart WD40 repeat 7.8e-06
    HMMSmart WD40 repeat 1.7
    HMMSmart WD40 repeat 1e-07
    HMMSmart WD40 repeat 83
    HMMSmart WD40 repeat 0.14

    See the detailed result >

    AT1G04510.1

    Model type
    Protein coding
    Short Description
    MOS4-associated complex 3A
    Curator Summary
    Encodes MAC3A, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity.
    Computational Description
    MOS4-associated complex 3A (MAC3A); FUNCTIONS IN: ubiquitin-protein ligase activity, nucleotide binding; INVOLVED IN: response to cadmium ion, defense response to bacterium; LOCATED IN: nucleolus, nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), U box domain (InterPro:IPR003613), WD40 repeat (InterPro:IPR001680), Pre-mRNA-splicing factor 19 (InterPro:IPR013915), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: MOS4-associated complex 3B (TAIR:AT2G33340.2); Has 53700 Blast hits to 26315 proteins in 787 species: Archae - 70; Bacteria - 7824; Metazoa - 20612; Fungi - 11571; Plants - 6404; Viruses - 0; Other Eukaryotes - 7219 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR