F25021

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25021

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F25021

Determination of introduced cDNA(s)

  • RAFL06-07-A07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-07-A07 - Resource: pda01391

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-07-A07 - full reading
    GCCGCTTCTG TTCGGTGTCC TCTCTCTCTT TCACTACTCA CCACCACTCT 
    CTCTCTCTCT CCCTCCATCT CTCTTGGATT CTCTCTCAGA TTCCATGGAA
    GCTCCAAAAA GCTGATTCGT TCAGCCAATT TTTCTTCACT CTCTCTCAGA
    TTCGGATCCG TGGTCAGATC AACCACCGTG TGTTTTCCGA TCCGATTCGA
    TTCTTTTTTT TGTCAGAGCT CTCAGATAAA TACTAGGATT CCGTTTCCAC
    CACAGATCCT TGATTTGATT TGGATTTATT TCTTCTTCTT TCTCTCTTCG
    AGTTTGATTC CACAAGATAC CTTGTCCTGC ATTGGAGAAA CTAATTTAAG
    GTAAGGTTTG ACTACTTAGA TGGTATGCAG CAGTTTCATA AGGAGTTTCA
    TTGTTCAAGC TGGTTGTCGT ATTGGGGTGT TGGCTCAAGG AAGACATCAG
    TTTATTCATA TTAAGAAGAC TTTGAGTGTG GGTTTTGGAT TTAGAACTAG
    TGTGATTGGA TTTAGAACAA CCAGTGGAAT TGGATTTAGA ACTAGTGCGA
    AGATGATGGT TGATACTTCT GCTGGAGAGA AACGTATATC CTTAGTTGAT
    ATGCCGCCTG AGAAAGTTGA TGATGGTGGA TACATCGGTG GTGGGTGGAA
    AAATGATGAT GGAAGCTTGA GCTGTGGGTA CTGTAGTTTC AGAGGGAAAA
    GATCTACGAT GGAAGATTTC TATGATATCA AAGCTTCCAC TATTGAAGGC
    CAAGCAGTTT GCATGTTTGG AATATTTGAT GGCCATGGTG GTTCACGTGC
    TGCTGAATAC CTGAAGGAAC ACCTGTTTAA CAATCTCATG AAGCATCCAC
    AATTTTTGAC AGACACCAAG CTGGCATTAA ATGAAACATA TAAACAAACT
    GATGTAGCAT TCCTCGAGTC CGAAAAGGAT ACTTACAGAG ATGATGGCTC
    CACAGCATCT GCTGCTGTGT TGGTGGGGAA CCATTTGTAT GTTGCAAATG
    TTGGAGACTC GAGGACAATA GTTTCTAAAG CTGGGAAAGC GATCGCGCTA
    TCTGATGACC ATAAGCCAAA TAGAAGCGAT GAAAGAAAGC GAATTGAAAG
    TGCTGGTGGT GTTATCATGT GGGCAGGAAC ATGGAGAGTA GGTGGGGTGT
    TGGCTATGTC CCGGGCCTTT GGTAACAGAA TGCTGAAGCA ATTCGTTGTT
    GCTGAACCCG AGATACAAGA TCTAGAGATA GATCATGAGG CCGAGTTGCT
    TGTGCTTGCA AGTGACGGTT TATGGGATGT GGTACCAAAT GAGGATGCGG
    TAGCCCTTGC TCAGAGCGAG GAAGAGCCCG AAGCAGCTGC CCGCAAGTTA
    ACTGACACTG CCTTCAGCCG TGGCAGTGCA GACAACATCA CGTGCATTGT
    TGTTAAATTC CGTCATGATA AGACAGAATC TCCTAAAATC GAAACAAACG
    CCATGGCTGA ATCGGAACCT GAACTGAACC CCACAACTGA ACTGGAACCT
    GAATCAAACC CCAGTACTGC ATTGGAAACT GAATCAATCC CCAAAGCTGA
    ACTGGAATCC GAACCTGATG CTATACCTGA TCCAAAACCT GAAACCGAAC
    CAGAGACCAA GGGTGAGAAA GCTGGTGAGT AAGGTAGCAG CCGGGGAAAG
    GTGTCCATAC TGTTGGGGAC ATGTGGAAAC AGATGAATAT AAAATTGCTT
    AGTAAGTTGT GTGGTTTGTG GCTACCTGTA ACGTGTGAGG ATTTGTGTTT
    TTTGGTTTTG TGTTGCATTC ATGCACATGC CTATGCCTGC CTTGAGGACG
    ACGACGACCC TTTTGACATG TCCCCGATTT TTGTCTATTC ATTTTACCCT
    ATTTTGTTTT TGTTGGTGCT ACTCACACCA AAAACAGCAC ATTTGTTCTC
    TGTTTCTCCT ACTTTTTTCT ATCTTTTATT TAAAACACCG TCCATTCCAA
    TAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT5G53140.1 [+] show detail - Protein phosphatase 2C family protein
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein phosphatase 2C, N-terminal 1.2e-63
    HMMSmart Protein phosphatase 2C-related 0.00570000021701947
    HMMPanther PTHR13832:SF87 0
    Gene3D Protein phosphatase 2C-related 2.70001369379003e-75
    PatternScan Protein phosphatase 2C, manganese/magnesium aspartate binding site 0
    superfamily Protein phosphatase 2C-related 1.5e-77
    HMMPanther Protein phosphatase 2C 0
    HMMSmart Protein phosphatase 2C-related 2.0000139277205e-85

    See the detailed result >

    AT5G53140.1

    Model type
    Protein coding
    Short Description
    Protein phosphatase 2C family protein
    Computational Description
    Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G10740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR