F25042

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25042

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25042

Determination of introduced cDNA(s)

  • RAFL06-08-D19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-08-D19 - Resource: pdz87556

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-08-D19 - 5 prime EST 
    GAGGAGTTCT CACAACAAGA TCGAGAAATA CACACATAGA AGACGAAGAA 
    GAAGAAGAAG ACGATACAGA TCCACAACGC CATGGGTTTA GGCATCTTAG 
    CTTCTCGAAC AATTCGACCA GCTTCACGTC TTCTTCAATC TCAAACCTCC 
    AATTTCTTCC TCCGCACAAT CGTCTCAAAA CCAGAGCTCC AATCTCCTGA 
    ATCCGCTGCT GTCTCTGAGC CTGAGCCGCC GACACAGATT CTCCCTCCTA 
    GAAACCCTGT AGGTGGAGCA CGCGTCCACT TNTCGAATCC TGAAGATGCG 
    ATCGAGGNCT TTGTCGATGG TTACGCGGTC AAAGTTCCTA AAGGATTCAC 
    TGNTCTTCAG GCTTGTGAGG

    Gene models with high sequence identity

    1. AT5G37510.2 [+] show detail - NADH-ubiquinone dehydrogenase, mitochondrial, putative
      E-value: 0; Score: 98.92

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-08-D19 - 3 prime EST 
    CGAATCTAAC AATGTGCTTA TTGCAAATTG CTTATAGATT TCACCGCAAG 
    CTAAACCCGA GATACAGTGA TACTCAGGCT TAAACAAAGG GTCTATAAAG 
    AGGACAGCAA ACGAAGAATC AGTATCTTTA TTTTTGCGAA AAGAGAGAAA 
    ATGTGAAAAC CCAAGTTAAA GCTCTCACTT TTTCAAGAGC ACGGCACTGC 
    ACTGCGCCAT GATCTTTGAT GCTCTTGTGA TCGAGTTTGT CATGTAAAAG 
    TTCTCAACCA CGGTTTGGAA CGGTGTTGTG CTCATTGCCT CCTTGCACTC 
    AGGCTTCAAT GAAGGCCCAA AAGCAGCTGG CTCTCGCTCA TCTGTGTGGA 
    CTAGATTTGG TGCAACGCTC TTTATTCTTG ATCTAACACC TTCGATTGAG 
    TTGTATGGAA GCTTCACACC CGAGACCTCG GATAAGGCTC TCACAATCTT 
    CCAGTCATCT CTTGCATCAC CAACTGTTGG AACAGCTGGA ACAGTCTGTT 
    GGGTAAATCC TTCAGTATTT TCATAGGTTC CTTCTTTCTC AGTGAAGGCC 
    GATGCAGGGG AGAATTACGT TGCACGGTAA ACCGCTTTGT CTCCATGGTG 
    TCCCTTGG

    Gene models with high sequence identity

    1. AT5G37510.1 [+] show detail - NADH-ubiquinone dehydrogenase, mitochondrial, putative
      E-value: 0; Score: 99.50

    AT5G37510.1

    Model type
    Protein coding
    Short Description
    NADH-ubiquinone dehydrogenase, mitochondrial, putative
    Curator Summary
    Encodes a subunit of the 400 kDa subcomplex of the mitochondrial NADH dehydrogenase (complex I). The protein has been isolated in the male gametophyte.
    Computational Description
    embryo defective 1467 (EMB1467); FUNCTIONS IN: in 6 functions; INVOLVED IN: response to oxidative stress, photorespiration, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, mitochondrial membrane, chloroplast, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding (InterPro:IPR019574), NADH:ubiquinone oxidoreductase, subunit G (InterPro:IPR010228), Molybdopterin oxidoreductase (InterPro:IPR006656), Ferredoxin (InterPro:IPR001041), NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site (InterPro:IPR000283), NADH-quinone oxidoreductase, chain G, C-terminal (InterPro:IPR015405); Has 12426 Blast hits to 11022 proteins in 2097 species: Archae - 340; Bacteria - 6853; Metazoa - 215; Fungi - 114; Plants - 76; Viruses - 0; Other Eukaryotes - 4828 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT5G37510.2

    Model type
    Protein coding
    Short Description
    NADH-ubiquinone dehydrogenase, mitochondrial, putative
    Curator Summary
    Encodes a subunit of the 400 kDa subcomplex of the mitochondrial NADH dehydrogenase (complex I). The protein has been isolated in the male gametophyte.
    Computational Description
    embryo defective 1467 (EMB1467); FUNCTIONS IN: in 6 functions; INVOLVED IN: response to oxidative stress, photorespiration, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, mitochondrial membrane, chloroplast, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding (InterPro:IPR019574), NADH:ubiquinone oxidoreductase, subunit G (InterPro:IPR010228), Molybdopterin oxidoreductase (InterPro:IPR006656), Ferredoxin (InterPro:IPR001041), NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site (InterPro:IPR000283), NADH-quinone oxidoreductase, chain G, C-terminal (InterPro:IPR015405); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR