F25045

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25045

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25045

Determination of introduced cDNA(s)

  • RAFL08-09-E02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-09-E02 - Resource: pda04528

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-09-E02 - full reading 
    ATGGCAGAGG AATTTGGCAA AGGGTATTGG CTAAAAATAA TAAGACACTC 
    GTTAGAGTGC TCGTCCCTCG TGCCCTTACC TGCCTAATTC CAACTATCTG 
    GCAAAATCAT GACTTTGATC CAAGATGCCG AGTTGAAACC AAGGATGGGT 
    TCTTTTAAGA AGAGGAGCTC TTCTAAGAAT TTGAGGTATT CAATGACAAA 
    GAGAAGAAGA AGTAGCAAAG TGATGTCTGT GGAGATCATC GAAGATGTGC 
    ATGACGCAGA GGAGTTGAAA GCCGTTGATG CTTTTCGCCA ATCGCTTATT 
    CTCGATGAGC TACTCCCGGA GAAACACGAT GACTACCATA TGATGCTTAG 
    ATTTTTGAAG GCTAGAAAAT TTGATCTTGA GAAAACCAAA CAGATGTGGA 
    CTGAAATGCT TAGATGGAGG AAAGAATTTG GTGCTGATAC TGTCATGGAG 
    GAGTTTGATT TCAAGGAAAT TGATGAAGTG TTGAAATACT ACCCTCAAGG 
    ACACCATGGA GTTGACAAGG AAGGACGACC TGTGTACATT GAGAGGCTTG 
    GTTTAGTAGA TTCTACCAAG TTGATGCAAG TCACAACCAT GGATAGGTAT 
    GTCAACTACC ATGTTATGGA GTTTGAGAGG ACCTTCAATG TTAAGTTCCC 
    AGCGTGCTCT ATCGCCGCGA AGAAGCACAT TGATCAGAGC ACAACTATTC 
    TTGATGTCCA AGGAGTGGGA CTGAAAAACT TCAACAAGGC TGCTAGAGAC 
    TTGATTACTC GTCTTCAAAA GGTCGATGGT GACAACTATC CTGAGACCTT 
    GAACAGGATG TTTATCATCA ATGCTGGCTC AGGATTCAGA ATGTTGTGGA 
    ACACGGTTAA GTCCTTCCTT GACCCGAAGA CTACAGCAAA AATCCATGTT 
    CTTGGCAACA AGTACCAAAG CAAGTTGCTT GAGATAATTG ATGAAAGTGA 
    ACTTCCTGAG TTTCTTGGAG GTTCATGTAC TTGTGCTGAC AATGGTGGCT 
    GCATGCGCTC TGACAAAGGC CCATGGAAAA ATCCAGAGAT CATGAAGAGA 
    GTTCACAATG GTGATCACAA ATGCTCAAAA GGATCCCAAG CTGAAAACTC 
    TGGAGAGAAG ACCATCCCTG AGGAAGATGA CTCTACAACA GAGCCGGCTT 
    CTGAAGAGGA AAAGGCTTCA AAAGAGGTCG AAATTGTCCC GGCCGCTCAC 
    CCAGCTTGGA ACATGCCAGA AGCTCACAAA TTTTCCCTCT CAAAGAAAGA 
    AGTTTACGCC ATTCAAGAGG CGTGCAACAA CGCTACAACA GAAGGAGGGA 
    GGTCACCTAT TTTCACAGGG GTCATGGCTC TTGTGATGGG TGTTGTCACT 
    ATGATTAAAG TGACTAAAAA CGTCCCAAGG AAACTAACCG AGTCAACCTT 
    GTACTCGAGC CCCGTGTACT GCGATGATGC ATCAATGAAC AAGAGTGCGA 
    TGCAGTCAGA GAAAATGACT GTACCTGCAA TCTCAGGGGA AGATTTCATG 
    GCCATTATGA AACGAATGGC TGAGTTGGAA CAGAAAGTGA CCGTCTTAAG 
    CGCGCAGCCA ACAGTTATGC CTCCGGATAA GGAAGAGATG CTTAACGCTG 
    CCATTAGCCG GTCCAATGTA TTGGAGCAAG AGCTTGCTGC CACCAAGAAG 
    GCTTTGGATG ATTCTCTTGG TCGTCAGGAG GAGCTTGTGG CGTACATCGA 
    GAAAAAGAAG AAGAAGAAGA AGCTGTTCAA CTACTGGTGA GAGAAGAACC 
    ATGAAGCGAA GGCTTAGTGG TGGCTTTATT TGTTTGATTG TATCCAAAAT 
    ATCTCTGACC AAAATCATCA AAGCCAAGCT TATTGTAAAA CCAATTTCTT 
    GTGTTTCTTA TTATTAAAGA ATGGTGAAAA GAAAGAAAGT TTTGTTCTTT 
    CTCTTGTGTA TATTATCAAA ATACCATGTA CATCAAATTG CAATTTTCC

    Gene models with high sequence identity

    1. AT4G36490.1 [+] show detail - SEC14-like 12
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 8.4e-14
    Gene3D Cellular retinaldehyde-binding/triple function, C-terminal 5.3e-67
    HMMPanther SEC14 CYTOSOLIC FACTOR-RELATED 1e-256
    HMMPanther SEC14 RELATED PROTEIN 1e-256
    superfamily Cellular retinaldehyde-binding/triple function, C-terminal 8.4e-62
    superfamily Phosphatidylinositol transfer protein-like, N-terminal 5.1e-19
    ProfileScan Cellular retinaldehyde-binding/triple function, C-terminal 26.709
    HMMSmart Cellular retinaldehyde-binding/triple function, C-terminal 2.7e-54
    HMMPfam Cellular retinaldehyde-binding/triple function, C-terminal 9.7e-28
    HMMPfam Cellular retinaldehyde-binding/triple function, N-terminal 7.5e-11

    See the detailed result >

    AT4G36490.1

    Model type
    Protein coding
    Short Description
    SEC14-like 12
    Computational Description
    SEC14-like 12 (SFH12); CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT2G18180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR