F25048

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25048

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25048

Determination of introduced cDNA(s)

RAFL06-15-P10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-15-P10 - Resource: pda03231

full reading [+] show sequence

ATTTCTTCTT CACCTTTAGA TTTTTCCTCG CTTAATTTCT CAATAACGCT 
CTCAGAGAGA CCATTTGATG AAGCTTCTCG CTTCTGGAAT TTGAAAAGGA 
TTTGATAAGA CGAGTTCATA GAAGATTACC GCAAGTTCAT CAACTTTTTG 
AACTTGTTAT GGAGATAATC TCACTGAACG TTGTGCCCCA GTGCTCTGTG 
GTTACTTGGA GTAGTAAATT AGCAACGAAA AGATTGGTCC CAAATCGGTC 
AAGTTTGTTA TTCTCAGGGG TCAAAAAATC CAGACTTGTG ATTCGAAGTG 
GAAATTCCGA TGGTTATGTT GTTGGTGAGA ATGATGACTT GGGTCGTATA 
GCCAGAAGAG GAGAATCAAC GTCAAAGGTT TTGATTCCTG GTTTGCCTGA 
TGAATCAAAT GGTGAAATTG CTGCTCGAAT CAGTCATTCT CACTGCGAGT 
GGAAGCCCAA GCTTAGAGTA CATTATGAGA AAGCCGGTTG TGACAATCTC 
GATGCTCCTG CGGTGTTGTT TCTTCCTGGC TTTGGCGTTG GTTCATTTCA 
CTATGAGAAG CAGCTTACCG ATTTGGGAAG GGATTATCGA GTATGGGCTA 
TTGATTTTCT TGGACAGGGT TTATCTCTCC CTACTGAAGA TCCTACTACC 
ATGACTGAAG AAACCAGTTC CTCGGAAGAT AAGGAACCAT TTTGGGGATT 
TGGTGACAAA ACTGAACCGT GGGCTGATCA ACTTGTATTC TCTCTGGATC 
TCTGGAGGGA TCAAGTTCAG TATTTTGTAG AAGAGGTTAT CGGTGAGCCT 
GTGTACATTG CAGGGAACTC ACTTGGAGGG TATGTAGCTC TCTACTTTGC 
AGCAACCCAT CCTCACCTGG TTAAGGGTGT TACCTTGCTT AATGCAACAC 
CTTTCTGGGG TTTCTTCCCT AATCCAGTAA GATCCCCAAA GCTAGCACGT 
CTCTTTCCAT GGCCCGGAGC ATTCCCTCTG CCGGAAAGAG TGAAAAAAAT 
CACAGAATTG GTGTGGCAAA AGATAAGTGA TCCTGAAAGC ATAGCTGAGA 
TACTTAAACA GGTCTACACA GACCATTCTA TCAATGTGGA TAAAGTATTC 
TCACGTATTG TGGAGGTCAC ACAGCATCCG GCTGCTGCAG CATCGTTTGC 
TTCAATCATG CTTGCTCCTG GTGGAGAGCT ATCTTTCTCC GAAGCTTTAT 
CTAGGTGTAA GGAAAACAAT GTTCAGATAT GTCTCATGTA TGGAAGAGAA 
GATCCATGGG TGAGACCGTT ATGGGGAAAG AAGATAAAGA AGGAAATCCC 
CAACGCTCCA TACTACGAGA TCAGCCCAGC GGGTCACTGC CCACACGATG 
AAGTCCCTGA GGTGGTGAAC TATCTGATGC GCGGGTGGAT CAAGCACCTG 
GAGTCTGGTG GTTTTGAAGC GCTCCCGCTT TTGGAGGACA CTGAAGAAGA 
TTGGGAGGAG TCCAGGATTG GTAGAGAAAT TGAGTTCCCG AGAGATGGTT 
GGAAAAAAGC AGTGAATCTG TGGTTATATG GGTCAAACTA TACGTACTGG 
AGAGGAGTTA GAGAATCTTT CAGATCCAGT TTTATAAGGG TGTTTGGAGG 
GAAGTCTGCA TAGAAGAAGC ATGGAACAGT CGTCTAGTGT AAATTAATTG 
TAATCTATGT TGCATCCGAT GCTAGCTATA TAATGTTGTC TGTAGAATCA 
AGTTTCTAAA ATGTTCAAAA GGAAAAGTTA GAAAAATATC TACTTGATAG 
TTAGTCACCT AAATCGAAGG AACTCCTTTC TTGCATTGTT GTATATAATC 
CACAGGTTCA GATTAATATA GGAAGGCGAC ATTGCAGGCT

Gene models with high sequence identity

AT5G13800.1 [+] show detail - pheophytinase
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	alpha/beta-Hydrolases	1.4e-49
Gene3D	no description	1.3e-43
HMMPanther	ALPHA/BETA HYDROLASE	2.9e-77
HMMPanther	ALPHA/BETA HYDROLASE RELATED	2.9e-77
HMMPfam	Alpha/beta hydrolase fold-1	1.8e-09

See the detailed result >

AT5G13800.1

Model type: Protein coding
Short Description: pheophytinase
Curator Summary: Encodes a pheophytinase that is involved in chlorophyll breakdown.
Computational Description: pheophytinase (PPH); FUNCTIONS IN: hydrolase activity, pheophytinase activity; INVOLVED IN: chlorophyll catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G36530.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR