F25119

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25119

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25119

Determination of introduced cDNA(s)

  • RAFL06-10-F05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-10-F05 - Resource: pda17173

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-10-F05 - full reading 
    TGAAAAACCA AAACTCTTAT CTTCGGTACA GAGCAAATCA CAGCTCCCGA 
    TGGCCGCCAC GTCATCATCA CCGCCGTGTA ACATCTCCGC GTCCTCCCTC 
    CTCCTCCGTC AACCTTCTCG CTCAATCCTT AAAGTGTTCG GTTTATTACC 
    ACCTGTAAGT AGGAATAACC GTAAACTCGG CCGGTTAACG GTGACCCGGT 
    CTAATCTGGC GCAGGATTTT CTTGGTGACT TCGGAGCTCG TGACCCTTAC 
    CCGGAGGAGA TAGCGAGTCA ATTCGGAGAT AAAGTGTTGG GATGCCAAAG 
    CACTGAGCAC AAGATTTTGA TACCAAACGC ATCTGTTTTG TCTCTCTCCC 
    AGCTTCAGTG TTCCCCTGTT TCGTCTTCAC AGCCTCCTTT GTCCGGCGAT 
    GATGCCAGAA CTCTCCTCCA CAAGGTTTTG GGATGGAGTA TAGTGGATAA 
    TGAAGCGGGT GGTCTGAAAA TAAGGTGTAT GTGGAAAGTG AGGGATTTTG 
    GGTGCGGTGT TGAACTCATA AACAGGATCC ATAAGGTTGC TGAAGCTTCT 
    GGTCATTACC CTTCTCTTCA CTTGGAAAGT CCTACCCAAG TTCGAGCTGA 
    ACTATTTACC TCTTCTATCG GAGGGTTGAG CATGAATGAT TTCATAATGG 
    CGGCTAAAAT AGATGATATC AAGACTTCTG ATCTTTCCCC TAGGAAAAGA 
    GCTTGGGCGT GATCTTCTTT TCATTATTTT GGAACATTTT TGTTTGATAG 
    TATGTAATGT ATGTGATGTA TTCTAAATTG TGTGTGATCG GTCTACATGT 
    CGAGTTATAT AGAAAGCATT GTCATAACCG CATAAGAGAT ATCACGCAAC 
    ATGTCTTTGA GATTCATTCA TCAATCAAAA GAAGAAAGAA CACCAAAAAA 
    AAAA

    Gene models with high sequence identity

    1. AT5G51110.1 [+] show detail - Transcriptional coactivator/pterin dehydratase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Transcriptional coactivator/pterin dehydratase 6.7e-20
    HMMPanther Transcriptional coactivator/pterin dehydratase 8.2e-60
    Gene3D Transcriptional coactivator/pterin dehydratase 5.7e-13
    HMMPfam Transcriptional coactivator/pterin dehydratase 8.5e-21

    See the detailed result >

    AT5G51110.1

    Model type
    Protein coding
    Short Description
    Transcriptional coactivator/pterin dehydratase
    Computational Description
    Transcriptional coactivator/pterin dehydratase; FUNCTIONS IN: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; INVOLVED IN: tetrahydrobiopterin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional coactivator/pterin dehydratase (InterPro:IPR001533); BEST Arabidopsis thaliana protein match is: Transcriptional coactivator/pterin dehydratase (TAIR:AT1G29810.1); Has 1849 Blast hits to 1849 proteins in 364 species: Archae - 43; Bacteria - 697; Metazoa - 0; Fungi - 2; Plants - 93; Viruses - 0; Other Eukaryotes - 1014 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR