F25123

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25123

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25123

Determination of introduced cDNA(s)

  • RAFL05-12-P23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-12-P23 - Resource: pda02555

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-12-P23 - full reading 
    GCCTCTTCGT GTGATTTACT GAGTGAAAAA AGCTTATCGC GGCGATTAGT 
    TCCCGGCGAA GAAGAAGAAG AGAGATAAGA AAATGGCGAC TAATGGATCT 
    GCTAGCTCAG CGCAGCTCTC TCAGAAGGAA GCTGATGTCA GGATGATGTG 
    TGCCGCTGAG GTTCATCTTG GAACCAAGAA TTGCAATTAC CAGATGGAGC 
    GTTACGTCTT CAAGAGACGC AACGATGGTA TTTACATCTT CAACCTTGGC 
    AAAACATGGG AAAAGCTCCA GATGGCTGCT AGAGTTATTG TTGCCATTGA 
    GAACCCACAG GACATCATCG TCCAGTCAGC TAGGCCCTAT GGACAGAGAG 
    CTGTGTTGAA GTTTGCTCAG TACACTGGAG CCAATGCCAT TGCTGGAAGA 
    CACACTCCTG GTACCTTCAC CAATCAGATG CAGACATCCT TCAGTGAACC 
    AAGGCTGTTG ATTCTTACTG ACCCAAGAAC TGACCACCAG CCTATCAAGG 
    AAGGTGCTTT GGGAAACATT CCAATCATTG CTTTCTGTGA CACAGACTCT 
    CCAATGAGAT TTGTTGACAT TGGTATCCCA GCCAACAACA AGGGAAAGCA 
    CAGCATTGGG TGCCTTTTCT GGCTTCTGGC TCGCATGGTC CTTCAGATGC 
    GTGGAACCAT TGCTGCTGGA CAGAAGTGGG ATGTCATGGT TGACCTGTTC 
    TTTTACAGGG AACCTGAGGA GACTAAGCCA GAGGATGAAG ATGAAGCTGG 
    CCCTCAGGCA GAATATGGTG CACTTCCTGC TCCAGAATAT GGAATGGTAG 
    GTGGAGACCA ATGGACCACC GCTCAGATCC CTGATGCTGC ATGGCCAGGA 
    GAAGGTCAGG CACCAATCTC TGCTGCACCT GCTGCTGCTT CTTGGAGTGA 
    TTCCGCTGCT GCACCGGCAG ATGGTGGATG GGAAGCTGCC GCGCCACCCT 
    CAGGGGCACC AGCTGCTGGT TGGGAGTAAA GTTGATAGCC TTTACTCAAT 
    GGTTTAATGG TTATAGACAT GCTTTTTTGT TACTTTTGGG ATTGAAGAGT 
    TATCGAACCG TAACTGTTTT TTCTTCTCAC TTGTTTCTCT TAAGACCCTT 
    AGATGTTTTG CACCTTTTTG TTTGAATCGA ATCTATATTT TGCGTTTATC 
    G

    Gene models with high sequence identity

    1. AT1G72370.1 [+] show detail - 40s ribosomal protein SA
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 40S RIBOSOMAL PROTEIN SA (P40) 9.9e-199
    HMMPanther Ribosomal protein S2, eukaryotic/archaeal 9.9e-199
    HMMTigr Ribosomal protein S2, eukaryotic/archaeal 1.3e-151
    FPrintScan Ribosomal protein S2 2.1e-29
    FPrintScan Ribosomal protein S2 2.1e-29
    FPrintScan Ribosomal protein S2 2.1e-29
    FPrintScan Ribosomal protein S2 2.1e-29
    FPrintScan Ribosomal protein S2 2.1e-29
    FPrintScan Ribosomal protein S2 2.1e-29
    HMMPfam Ribosomal protein S2 8e-22
    HMMPfam Ribosomal protein S2 5.6e-19
    superfamily Ribosomal protein S2 2.9e-69
    PatternScan Ribosomal protein S2, conserved site 0
    PatternScan Ribosomal protein S2, conserved site 0

    See the detailed result >

    AT1G72370.1

    Model type
    Protein coding
    Short Description
    40s ribosomal protein SA
    Curator Summary
    acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.
    Computational Description
    40s ribosomal protein SA (P40); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to salt stress, mature ribosome assembly, translation, response to osmotic stress; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865), Ribosomal protein S2, conserved site (InterPro:IPR018130), Ribosomal protein S2, eukaryotic/archaeal (InterPro:IPR005707); BEST Arabidopsis thaliana protein match is: 40s ribosomal protein SA B (TAIR:AT3G04770.2); Has 3789 Blast hits to 3785 proteins in 1365 species: Archae - 262; Bacteria - 1853; Metazoa - 688; Fungi - 331; Plants - 191; Viruses - 0; Other Eukaryotes - 464 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR