F25138

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25138

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25138

Determination of introduced cDNA(s)

  • RAFL09-89-I20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-89-I20 - Resource: pdz88344

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL09-89-I20 - 5 prime EST 
    GACTCCAAAC TCCAAAGCAT CAATATTTTA TCACTCCTCT TTTCTTCCAC 
    GCAAACCCAA TTCTCTTCGT CTTCTTCTTT TGCTTTTCTC CCCTAAATTC 
    GTCGATCAAA TTCTTGTCTT TTCAACTTCT TCATCGAATT TTCCATTGCC 
    CATAGCCTCT GTATTTGATT CCTCCTTCTC TAAAGCTTCG GATATTAAGA 
    CAATTATATC TTCCTAGCTG CTTATAGACC TTCGCTTTCT AATTGCTGTT 
    CCTTTCGTGG GTCTCTGGAT TTGTAGTTGC ATTCTCATTG CGCACTACAC 
    TTTCTTCAAA TTTCCGCGTG GTAAGCAGGG AATGGACCGG CTGTTTTGGC 
    CAATCGTCTG TGTTTACAAA TGATGAGCAG TGGGCATAAG GGTCCAAATG 
    TACGTAACTT TTTTAAATGG CANCGTGGTG AATCATCATC GTCTTTGACT 
    ACTGGATTGC TTCATANTGA GTCACACGAG ATTGAGCTAT CTAACTACGG 
    GAGGAATACN AAGTCC

    Gene models with high sequence identity

    1. AT2G31260.1 [+] show detail - autophagy 9 (APG9)
      E-value: 0; Score: 99.22

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL09-89-I20 - 3 prime EST 
    CGAAAAACAC CATTTTTAAG GACCTATTTT ATATACACAA CAATAAAGAA 
    TTGCATGTAT TGTTAGGATG AAACATAACC AAAGAAAAAA AAAAAAAAGA 
    GGAGAGATTT GTTATTATTC CCACATTTTT TTTTCCAAAT ACAGAGAACA 
    CTTTCTACAA AAGCATCTCT TTTATCTTCC TTCTTCATCC ACCATAAAAA 
    AGACTGAACA AAGAAACAAT TTTGAATCAA AAAAAT

    Gene models with high sequence identity

    1. AT2G31260.1 [+] show detail - autophagy 9 (APG9)
      E-value: 2e-121; Score: 98.72

    AT2G31260.1

    Model type
    Protein coding
    Short Description
    autophagy 9 (APG9)
    Curator Summary
    Involved in autophagy, the process of vacuolar bulk degradation of cytoplasmic components. Mutant shows accelerated bolting and senescence.
    Computational Description
    autophagy 9 (APG9); CONTAINS InterPro DOMAIN/s: Autophagy-related protein 9 (InterPro:IPR007241); Has 489 Blast hits to 477 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 166; Plants - 51; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR