F25145

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25145

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
T2  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25145

Determination of introduced cDNA(s)

  • RAFL09-75-K21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-75-K21 - Resource: pda17834

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-75-K21 - full reading 
    CCCTTTTAGA AAGAAGACTC TCTTTTAAGT TTGGGTGTTA ATTCTAGGGT 
    TTCCATTAAC AATGGCAGAT TCTTCTTCTG CTTCTTACAT TCACATGGTG 
    CAGCACATGA TAGAGAAATG TTTGATCTTC CATATGAGCA AAGAAGAGTG 
    TGTGGAAGCT CTCTCTAAGC ATGCAAACAT CACTCCTGTC ATCACCTCTA 
    CTGGTTTTAA TTCCTCTCTC TCTCTCTCCT CTTTTTTAAT ACTTTTTACC 
    TTTCCGTAAT CCTTATAAAC ACACAAACAT ATCTGTACCT ATGTACTCTC 
    TAACGGGATT AATTATATGT ATAAATTATG GAGCTATCAT CATATTATGA 
    TACCATCATT TAGAATTTGA TCATGTAATA TGTACTTAAT TAGCTACAGA 
    TAGGATCTAG CGTGATGGAT CGATCTTCAA TATTTCTATT CATATAAGTG 
    CTCATGCATA ATCAAATTAA TGATTATATA CACTGACTTG ACTACCTGGC 
    GACTAGAACT TATACATATA CAAAAAAAGC CAAAGAAAAT ATAAAAATCC 
    TTGCAACATA TATATCCGGC CTATATATTT TGTTATCATA ATATTAATGA 
    ATTGGAACAA AATAAATGAC AGTGTGGAAG GAGCTGGAGA AAGAGAACAA 
    GGAATTCTTC AAGGCGTATG AGGAGAGGCA AAGCAAACAA GAGCAAATGT 
    CGGAGGAAGA GACAAACCAG ATGATCCAGA AGATTATCTC GGATTCATCT 
    AAAGAATCCG ACGACTGATC GCGATGTTCG ATCGTTAGAT TTCGAAAACC 
    TTATAGTTTA TATATATGAA TCTCATGAAA ACGATTTATC CCTGACGCAT 
    GCATGTTTAT AAGTAAATCG TTTTTTCATC TTAGCATCGG TCCAACAAGC 
    AAGACAGCAA AAAAAGGAGT GATGACACTC TTTTTGGTAC GTTATACGTA 
    CGTGGTCCAC ATAATATTGC CTCTGTTTAA TTATATATAA TGAAACGGAC 
    GCTAGCTCAT ACATGGATCG ATGGTGTGGT GTTTTAATTG AATGTATCGT 
    GTGTATATAT TTTCAAATAA ACTATTTATT TCGGGTTAAA AAAAAAA

    Gene models with high sequence identity

    1. AT3G55240.1 [+] show detail - Plant protein 1589 of unknown function
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Conserved hypothetical protein CHP01589, plant 0.0000659999999999999
    HMMTigr Conserved hypothetical protein CHP01589, plant 0.000000043
    HMMPfam Conserved hypothetical protein CHP01589, plant 3.1e-17

    See the detailed result >

    AT3G55240.1

    Model type
    Protein coding
    Short Description
    Plant protein 1589 of unknown function
    Curator Summary
    Overexpression leads to PEL (Pseudo-Etiolation in Light) phenotype.
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: developmental process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G28990.1); Has 220 Blast hits to 220 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR