F25146

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25146

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25146

Determination of introduced cDNA(s)

  • RAFL07-18-K15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-18-K15 - Resource: pda04455

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-18-K15 - full reading 
    ATTTTCCCAG AAACCTTTGT TTCATTTGCT TCGTGTGCGA TCGCGAGAAC 
    AAGGGAAAAT TAGGGTTTAT ATCCTCAAGC TTTTTCGAAC ACCATTGATC 
    GTTGATCTAA GATTTTTCTT CTAGTCGAGT TTCTTAAGGG GCTTTGATCA 
    AACTCAAAAT TGAAGACCAA TACTTTGAAG GATTCTGGTA AAGCTAAGCA 
    ACTATGAGTT CAAATTCATG GGCTGATGTT TCTGAATCAG AGAGGGCACC 
    ATCTGGTGGT GGTTGGGGTT ATTCTCGTCC GTCTCGAACC AACTATGTTC 
    CTCCACATCT TAGGAGCCGT ACACCATCTT CGGAGTTTGT TGCTCCTTCA 
    CCTGGTAATA ATGATCGTGG GGGATATGGT GGTGCAAATA GTGGTTATGG 
    TGGTCGAGGC CAAGGTTATG GTGGTCGAGG TTCGGGCTAT GGTGGTAGAG 
    GAGGTCCTGT GGGCGGTTGG AATGCCAGAA GTGGAGGTTG GGACCGTCGG 
    GATACTGAAA CTAACCCGTT TGGTAATGAT GGAAATGCAG ACCCGGCTGT 
    TAACGAGCAG GAAAACACTG TCATTAACTT TGAGGCCTAT GAAGATATTC 
    CCATCGAGAC AAGTGGGGAT AATGTGCCAC CTCCTGTTAA TACATTTGCA 
    GAGATAGACC TCGGAGAAGC TCTCAATCTA AATATCCAGA GGTGCAAATA 
    CGTGAAGCCG ACCCCTGTGC AGCGTAATGC AATTCCCATA TTGGCTGCAG 
    GAAGGGATTT GATGGCTTGT GCTCAGACAG GCTCTGGGAA GACAGCTGCC 
    TTTTGTTTTC CGATTATTAG TGGGATTATG AAGGATCAGC ATATAGAGAG 
    ACCACGTGGA GTTCGGGGAG TCTATCCTCT TGCTGTCATT CTCTCACCAA 
    CAAGGGAATT GGCTTGCCAG ATACATGATG AAGCCAGAAA GTTCTCCTAT 
    CAAACTGGAG TGAAAGTTGT GGTTGCTTAC GGAGGAACAC CAGTCAACCA 
    ACAGATTAGG GAGCTTGAAA GAGGAGTTGA TATTCTTGTT GCAACTCCTG 
    GGAGATTAAA TGATTTGCTT GAGAGAGGTA GAGTCTCATT ACAGATGGTA 
    AGATTCTTGG CACTTGATGA GGCGGACAGA ATGCTGGACA TGGGTTTTGA 
    ACCACAAATC AGGAAGATCG TTCAGCAGAT GGACATGCCT CCTCCTGGTG 
    TCCGGCAGAC AATGTTGTTC AGTGCTACAT TTCCTAGGGA GATACAGAGA 
    CTTGCATCTG ATTTTCTTTC AAATTACATA TTTCTGGCTG TTGGAAGAGT 
    GGGTTCAAGT ACGGATTTAA TTGTCCAAAG AGTAGAGTTT GTTCATGATT 
    CTGACAAAAG AAGCCATCTA ATGGACCTTC TTCATGCCCA GAGGGAGAAT 
    GGTAACCAAG GAAAGCAAGC TTTGACTCTA GTTTTTGTGG AGACAAAGAA 
    GGGAGCTGAC TCTTTGGAGA ATTGGTTGTG CATCAATGGT TTCCCAGCAA 
    CGACCATTCA TGGTGATAGG TCACAACAGG AAAGAGAAGT GGCACTGAGA 
    TCATTCAAGA CTGGGCGGAC ACCTATTTTG GTTGCAACCG ATGTGGCAGC 
    ACGTGGTCTT GACATTCCGC ACGTGGCTCA TGTAGTGAAC TTTGATCTAC 
    CAAACGACAT TGATGACTAT GTCCACCGTA TCGGACGAAC AGGACGTGCA 
    GGAAATTCAG GACTAGCAAC TGCTTTCTTC AATGACAACA ACACAACAAT 
    GGCCAAGCCA CTGGCTGAGC TAATGCAAGA AGCTAACCAG GAGGTCCCTG 
    ACTGGCTGAC TCGATACGCA TCTCGTGCTT CATTTGGAGG TGGTAAGAAC 
    CGGCGGTCTG GTGGACGGTT TGGTGGTCGT GACTTCAGGA GAGAATCTTT 
    TAGTCGAGGC GGTGGTGGTG CTGACTACTA TGGTGGAGGT GGTGGATATG 
    GAGGCGTTCC TGGTGGTGGC TATGGAGCAA TGCCTGGTGG GTACGGACCC 
    GTACCAGGTG GTGGATATGG AAATGTTCCG GGTGGTGGTT ATGCACCTTA 
    TGGTAGAGGT GGTGGTGCTT ACTATGGTCC TGGAGGATAT GGAACCGTTC 
    CTAACCAAGG GTATGGTCCT GGAGTGGCTA GTGCGTGGGA CTAAGCTTTA 
    ACTTCAATTC TTCAAGAACC GATTATGTTC TCTTTCTCTC TCACTTATCT 
    CTATTGTTTA TTATTAGGGA GCAGCCACAG ATGTGTATGT TTGCTCTTTA 
    AATGGTTATG TAGTAGACAC GAATCGTCTC TTTGTTCAAT GTGAAAAAAG 
    AAAACCCCCT AGTAGACCC

    Gene models with high sequence identity

    1. AT3G58570.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 5.7e-50
    HMMPfam DNA/RNA helicase, C-terminal 7.4e-27
    HMMSmart DEAD-like helicase, N-terminal 2.4e-61
    HMMSmart DNA/RNA helicase, C-terminal 2.8e-35
    HMMPanther DEAD-BOX PROTEIN 3 0
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 0
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 29.736
    ProfileScan DNA/RNA helicase, C-terminal 22.952
    ProfileScan RNA helicase, DEAD-box type, Q motif 9.689
    Gene3D no description 2.4e-70
    Gene3D no description 8.1e-47
    superfamily P-loop containing nucleoside triphosphate hyd 4.8e-59
    superfamily P-loop containing nucleoside triphosphate hyd 7.5e-47

    See the detailed result >

    AT3G58570.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G42520.1); Has 86488 Blast hits to 59724 proteins in 3531 species: Archae - 886; Bacteria - 35070; Metazoa - 23291; Fungi - 6787; Plants - 8100; Viruses - 385; Other Eukaryotes - 11969 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR