F25205

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25205

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25205

Determination of introduced cDNA(s)

  • RAFL03-06-B01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-06-B01 - Resource: pda13442

    full reading [+] show sequence

    Nucleotide sequence: RAFL03-06-B01 - full reading 
    TAGATATCAG GATTCAAGAA AACGCAATGG CTGGGATCTT GAATCTTTCC 
    AAGCACGTTA CCGGAAAATC TAAGATTGCG GGAGAAGGGT TAAAGATACT 
    TGTAGAGATT CTCAACGAAG GAGCTAAAAC AGAGACGAGA CTATACTCTG 
    CTTCTGCTCT GTTTTATCTC TCTTCCGTTG AAGATTACAG CAGATTGATC 
    GGAGAAAATC CAGATGCGAT TCCGGGATTG ATGAATATCG TTAAAGGAGA 
    TGATTACGGC GATTCCGCCA AACGTAGCGC GTTGCTTGCG GTTATGGGTT 
    TGTTAATGCA ATCCGATAAC CATTGGCGTG TTCTCGCCGC CGGAGCTGTT 
    CCGATTCTTC TTGATCTGTT GAGATCGGGG GAGATTAGCG GCGGACTCAC 
    GGCGGATTGT TTAGCGACGT TGGCGAAGCT GGCGGAGTAT CCTGATGGGA 
    CGATTGGGGT GATTCGTCGT GGCGGTTTGA AACTCGCGGT GAAGATTTTG 
    TCTTCGTCGG AGGATTCTCC GGTGGCGGTG AAGCAGCATT GTGTTGGTCT 
    GATTTTGAAC TTGTGTCTTA ACGGAGGACG TGACGTCGTT GGGGTTCTGG 
    TGAAGAATTC GTTGGTCGTG GGGTCGCTTT ACACGGTGTT AAGTAACGGC 
    GAATATGGAG GAAGCAAGAA GGCTAGTGCG CTGATCAGAA TGATCCATGA 
    GTTCCAGGAG AGGAAAACCG GTTCGGTTGA ACCGAATCAT CAAAGAGGAC 
    GGTTCGTTCA CGCCTGGTGA TTTTGGTACA CAGTAACTCT TGAGTATTTT 
    AAAGAGTTAT TTACCATAAA GAAAACTAAA TAATTTTGGT TAAGGGTGAA 
    ATTCTTTTAT TAATTTTTAT GTAAAGGGTT TAGTGTTTGT ATATTTAGCT 
    CGGGTTTTAT TTTCATAAAC CAAAGAGCTA CTGGGATGGC AATAAGCTTC 
    AGTTTTTTTA AGAAGCTGTG TCCATATTCC ATAATGTAAT TATAACTGAA 
    TCAATAAAAA CTATTACAAT T

    Gene models with high sequence identity

    1. AT1G10560.1 [+] show detail - plant U-box 18
      E-value: 0; Score: 99.80

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Armadillo-like helical 1.5e-14
    ProfileScan Armadillo 8.837
    superfamily Armadillo-type fold 1.2e-23
    HMMSmart Armadillo 94
    HMMSmart Armadillo 29
    HMMSmart Armadillo 12

    See the detailed result >

    AT1G10560.1

    Model type
    Protein coding
    Short Description
    plant U-box 18
    Curator Summary
    Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.
    Computational Description
    plant U-box 18 (PUB18); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G60190.1); Has 3089 Blast hits to 2773 proteins in 228 species: Archae - 0; Bacteria - 22; Metazoa - 252; Fungi - 338; Plants - 2172; Viruses - 3; Other Eukaryotes - 302 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR