F25236

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25236

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25236

Determination of introduced cDNA(s)

  • RAFL09-48-J19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-48-J19 - Resource: pda08414

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-48-J19 - full reading 
    TTTTCTTTTT TTTTGATTTA AACCAAAAGG GTAAACAATG CTTTATGATT 
    GCTTAGTGAC GCCATTGAAG CAGCGGCTCA CTGATAGTGG CTTCTTCTGC 
    CTCCAATTCC AAGTGGATTT TGTTTCACTC ACTCATCGTC GTTGATCAGT 
    GACTCTGTTT TTGCGAAATT CTCTTCAGAT TTCTTGATAA AAGATAGAAG 
    ACGGAATTAT GAGTGGAGCT GTGCTTGTTG CTATTGCTGC TGCTGTTGGC 
    AACTTGTTAC AAGGATGGGA TAACGCAACT ATTGCAGGAG CTGTGTTGTA 
    CATAAAAAAG GAGTTTAATT TGGAGAGTAA TCCATCAGTG GAAGGTCTAA 
    TTGTGGCGAT GTCACTTATT GGTGCTACTC TGATTACAAC ATGCTCTGGA 
    GGGGTAGCTG ATTGGCTTGG TCGCCGTCCC ATGCTAATAT TGTCCTCAAT 
    TCTCTACTTT GTTGGTTCTC TAGTAATGCT ATGGTCTCCG AATGTTTATG 
    TGTTGCTCTT AGGAAGGTTG TTAGATGGAT TTGGGGTTGG TCTTGTGGTC 
    ACACTTGTTC CTATTTATAT ATCTGAGACT GCACCACCTG AGATTAGGGG 
    ACTGTTGAAT ACGCTACCGC AGTTCACTGG CTCTGGAGGG ATGTTCTTAT 
    CTTACTGTAT GGTTTTCGGA ATGTCGTTGA TGCCATCACC TAGCTGGAGA 
    TTGATGCTTG GTGTCCTTTT CATCCCTTCC CTTGTCTTTT TCTTCCTCAC 
    GGTCTTCTTC TTGCCCGAGT CCCCAAGGTG GCTCGTGAGC AAAGGTCGAA 
    TGCTTGAAGC AAAGCGGGTT CTTCAGAGAC TGCGTGGTCG CGAAGATGTG 
    TCTGGTGAGA TGGCTTTGTT GGTTGAGGGT CTTGGAATTG GAGGTGAAAC 
    AACCATAGAG GAATATATAA TTGGTCCCGC GGATGAAGTT ACTGATGATC 
    ATGATATAGC TGTGGATAAG GATCAAATTA AGTTATATGG TGCAGAAGAA 
    GGGCTGAGTT GGGTTGCTAG GCCAGTCAAA GGAGGAAGCA CTATGAGTGT 
    TTTGTCTCGC CATGGAAGTA CAATGAGCAG GAGGCAAGGC TCATTGATTG 
    ATCCTCTTGT CACACTGTTT GGGAGCGTTC ACGAGAAGAT GCCGGACACT 
    GGAAGCATGA GGAGTGCCTT GTTCCCACAT TTTGGGAGTA TGTTCAGTGT 
    TGGAGGGAAT CAACCAAGAC ATGAAGATTG GGATGAAGAG AATCTTGTTG 
    GAGAAGGTGA GGATTATCCA TCCGACCATG GAGATGATTC TGAAGATGAT 
    CTTCATTCTC CGTTGATCTC ACGTCAAACG ACAAGCATGG AGAAAGACAT 
    GCCTCACACT GCTCATGGAA CTCTTTCTAC CTTCAGACAT GGAAGTCAAG 
    TGCAGGGAGC TCAAGGGGAA GGAGCGGGTA GTATGGGGAT TGGAGGTGGA 
    TGGCAAGTGG CATGGAAATG GACGGAAAGA GAAGATGAAT CGGGACAGAA 
    AGAAGGTGGG TTTAAACGGA TATACTTGCA TCAAGAAGGT TTCCCAGGAT 
    CTCGACGTGG CTCAATTGTT TCATTGCCTG GTGGTGATGG AACCGGTGAG 
    GCAGATTTTG TACAAGCGTC TGCTTTGGTT AGCCAACCAG CTCTTTATTC 
    CAAAGACCTT CTCAAAGAAC ATACAATTGG TCCTGCTATG GTACATCCAT 
    CCGAAACAAC TAAAGGGTCA ATTTGGCATG ATCTTCATGA TCCTGGAGTC 
    AAGCGTGCAT TAGTCGTAGG AGTTGGACTT CAAATACTTC AGCAGTTCTC 
    AGGCATCAAC GGAGTTCTTT ACTACACACC GCAAATCCTT GAGCAGGCGG 
    GTGTCGGGAT CCTACTATCG AACATGGGGA TTAGTTCTTC CTCAGCATCC 
    TTACTTATAA GTGCATTGAC AACCTTTGTG ATGTTACCTG CAATAGCTGT 
    TGCAATGAGG CTCATGGATC TTTCTGGTCG AAGGACCTTG CTTCTCACCA 
    CGATACCAAT CCTGATAGCA TCTCTATTGG TTTTAGTAAT CTCAAATCTT 
    GTTCACATGA ACAGCATTGT GCACGCGGTC TTATCAACCG TAAGCGTTGT 
    GCTCTACTTC TGCTTCTTCG TGATGGGTTT CGGTCCTGCT CCAAACATCC 
    TCTGTTCAGA GATTTTTCCA ACTCGAGTCC GCGGAATCTG CATCGCCATC 
    TGCGCACTCA CCTTCTGGAT CTGTGACATA ATCGTCACTT ACAGTCTCCC 
    CGTGCTGCTC AAATCCATTG GACTAGCTGG TGTGTTTGGA ATGTACGCAA 
    TCGTATGTTG CATTTCATGG GTCTTTGTGT TCATTAAAGT CCCGGAAACT 
    AAAGGCATGC CACTTGAAGT CATCACAGAG TTCTTTTCTG TTGGAGCTAG 
    ACAAGCTGAA GCTGCTAAAA ACGAGTGAGA AACTGAAAGA CTTGTTGAGA 
    TAAAAAGTTT GTGTAATATT CATGTGGATT TGTTGTTGTC TTTTTACTTT 
    GTGCAGTAAT AATCATCTCT CTCTGTTTCG TCTTCTTCAT GTGGGGAGAA 
    AAAAAAGTTT CAAACTTTCT

    Gene models with high sequence identity

    1. AT4G35300.1 [+] show detail - tonoplast monosaccharide transporter2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Sugar/inositol transporter 4.7e-18
    FPrintScan Sugar/inositol transporter 4.7e-18
    FPrintScan Sugar/inositol transporter 4.7e-18
    FPrintScan Sugar/inositol transporter 4.7e-18
    FPrintScan Sugar/inositol transporter 4.7e-18
    HMMPanther SUGAR TRANSPORTER 7.5e-132
    HMMPanther SUGAR TRANSPORTER 7.5e-132
    PatternScan Sugar transporter, conserved site 0
    PatternScan Sugar transporter, conserved site 0
    superfamily Major facilitator superfamily, general substrate transporter 7.1e-69
    ProfileScan MFS 35.091
    HMMPfam General substrate transporter 2.3e-53
    HMMPfam General substrate transporter 6.3e-40

    See the detailed result >

    AT4G35300.1

    Model type
    Protein coding
    Short Description
    tonoplast monosaccharide transporter2
    Computational Description
    tonoplast monosaccharide transporter2 (TMT2); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity; INVOLVED IN: response to fructose stimulus, response to salt stress, response to sucrose stimulus, response to glucose stimulus; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: tonoplast monosaccharide transporter3 (TAIR:AT3G51490.2); Has 51368 Blast hits to 39283 proteins in 2480 species: Archae - 776; Bacteria - 26387; Metazoa - 6850; Fungi - 11680; Plants - 3625; Viruses - 0; Other Eukaryotes - 2050 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR