F25245

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25245

Determination of introduced cDNA(s)

RAFL06-89-E09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-89-E09 - Resource: pda17275

full reading [+] show sequence

CGATAGGAGT CATGTGTTTC TTCTTGTCTT CCTAGCTTCT TCTAATAAAG 
TCCTTCTCTT GTGAAAATCT CTCGAATTTT CATTTTTGTT CCATTGGAGC 
TATCTTATAG ATCACAACCA GAGAAAAAGA TCAAATCTTT ACCGTTAATG 
GAGGAAGTAT CTCCGGCGAT CGCAGGTCCT TTCAGGCCAT TCTCCGAAAC 
CCAGATGGAT TTCACCGGGA TCAGATTGGG TAAAGGTTAC TGCAATAACC 
AATACTCAAA TCAAGATTCC GAGAACGGAG ATCTAATGGT TTCGTTACCG 
GAGACTTCAT CATGCTCTGT TTCTGGGTCA CATGGTTCTG AATCTAGGAA 
AGTTTTGATT TCTCGGATCA ATTCTCCTAA TTTAAACATG AAGGAATCAG 
CAGCTGCTGA TATAGTCGTC GTTGATATCT CCGCCGGAGA TGAGATCAAC 
GGCTCAGATA TTACTAGCGA GAAGAAGATG ATCAGCAGAA CAGAGAGTAG 
GAGTTTGTTT GAATTCAAGA GTGTGCCTTT GTATGGTTTT ACTTCGATTT 
GTGGAAGAAG ACCTGAGATG GAAGATGCTG TTTCGACTAT ACCAAGATTC 
CTTCAATCTT CCTCTGGTTC GATGTTAGAT GGTCGGTTTG ATCCTCAATC 
CGCCGCTCAT TTCTTCGGTG TTTACGACGG CCATGGCGGT TCTCAGGTAG 
CGAACTATTG TAGAGAGAGG ATGCATTTGG CTTTGGCGGA GGAGATAGCT 
AAGGAGAAAC CGATGCTCTG CGATGGTGAT ACGTGGCTGG AGAAGTGGAA 
GAAAGCTCTT TTCAACTCGT TCCTGAGAGT TGACTCGGAG ATTGAGTCAG 
TTGCGCCGGA GACGGTTGGG TCAACGTCGG TGGTTGCCGT TGTTTTCCCG 
TCTCACATCT TCGTCGCTAA CTGCGGTGAC TCTAGAGCCG TTCTTTGCCG 
CGGCAAAACT GCACTTCCAT TATCCGTTGA CCATAAACCG GATAGAGAAG 
ATGAAGCTGC GAGGATTGAA GCCGCAGGAG GGAAAGTGAT TCAGTGGAAT 
GGAGCTCGTG TTTTCGGTGT TCTCGCCATG TCGAGATCCA TTGGCGATAG 
ATACTTGAAA CCATCCATCA TTCCTGATCC GGAAGTGACG GCTGTGAAGA 
GAGTAAAAGA AGATGATTGT CTGATTTTGG CGAGTGACGG GGTTTGGGAT 
GTAATGACGG ATGAAGAAGC GTGTGAGATG GCAAGGAAGC GGATTCTCTT 
GTGGCACAAG AAAAACGCGG TGGCTGGGGA TGCATCGTTG CTCGCGGATG 
AGCGGAGAAA GGAAGGGAAA GATCCTGCGG CGATGTCCGC GGCTGAGTAT 
TTGTCAAAGC TGGCGATACA GAGAGGAAGC AAAGACAACA TAAGTGTGGT 
GGTGGTTGAT TTGAAGCCTC GGAGGAAACT CAAGAGCAAA CCCTTGAACT 
GAGGCAGAGA GGGTCCTTTT TCTTAATTTT TAAAATGAAT ATGGGTCTCT 
CCAAGAAAAA GTATTTACTA TTATTAATTT GTGCTTATTT TTTTAACTAA 
CAAGTTATAA CCATATGGAG ATAATGAAGC TTAATGTGTT AAGCTCTTTT 
GTCTTGACTA CATTCTAAAA AGCCCCTTGT ATTTTTCTTC CCGGGCTAAT 
TGTAATATGG TTACAACATA CATTAAGATG TAGTATTATT GTTTATGCGA 
AAAAAAAAA

Gene models with high sequence identity

AT4G26080.1 [+] show detail - Protein phosphatase 2C family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Protein phosphatase 2C-related	8.6e-78
HMMPanther	PROTEIN PHOSPHATASE 2C EPSILON	7.4e-154
HMMPanther	Protein phosphatase 2C	7.4e-154
HMMSmart	Protein phosphatase 2C-related	1.4e-114
HMMPfam	Protein phosphatase 2C, N-terminal	8.2e-75
PatternScan	Protein phosphatase 2C, manganese/magnesium aspartate binding site	0
Gene3D	Protein phosphatase 2C-related	9.1e-76

See the detailed result >

AT4G26080.1

Model type: Protein coding
Short Description: Protein phosphatase 2C family protein
Curator Summary: Involved in abscisic acid (ABA) signal transduction. Negative regulator of ABA promotion of stomatal closure.
Computational Description: ABA INSENSITIVE 1 (ABI1); CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G57050.1); Has 6864 Blast hits to 6731 proteins in 444 species: Archae - 4; Bacteria - 295; Metazoa - 1756; Fungi - 772; Plants - 2717; Viruses - 7; Other Eukaryotes - 1313 (source: NCBI BLink).
Link: InterPro Scan - TAIR