F25326

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25326

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25326

Determination of introduced cDNA(s)

  • RAFL05-07-H16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-07-H16 - Resource: pda01136

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-07-H16 - full reading 
    ACGCCGCTCA TTTTTAGGGT TTCAGATATA GGCAGATTCT CACATTTGCA 
    AACATGACGA CTCAGATCAG CAAGAAGAGA AAGTTTGTAG CGGACGGTGT 
    GTTCTACGCT GAATTGAATG AGGTTCTTAC AAGAGAGCTA GCAGAGGATG 
    GTTACTCTGG TGTTGAGGTT AGGGTTACTC CTATGAGGAC TGAGATTATC 
    ATCAGAGCTA CACGTACTCA GAATGTTCTC GGTGAGAAGG GGAGGAGAAT 
    TAGGGAATTG ACTTCCCTTG TTCAGAAGAG ATTCAAGTTT CCAGTTGACA 
    GTGTTGAGCT TTATGCCGAG AAGGTTAACA ACAGAGGTCT CTGTGCCATC 
    GCTCAGGCTG AGTCTTTACG TTACAAGCTT CTTGGTGGTC TCGCTGTTCG 
    TAGGGCTTGC TATGGTGTGT TGAGGTTTGT TATGGAGAGT GGAGCTAAGG 
    GATGCGAGGT TATCGTGAGT GGAAAGCTTC GTGCTGCCAG AGCCAAGTCT 
    ATGAAGTTCA AAGATGGCTA CATGGTGTCA TCTGGTCAAC CAACTAAGGA 
    ATACATAGAC TCTGCAGTGA GACATGTTTT GCTTAGACAA GGTGTGTTGG 
    GAATCAAGGT GAAGGTTATG CTTGATTGGG ACCCTAAGGG CATATCAGGA 
    CCAAAGACAC CATTGCCTGA TGTTGTGATC ATTCATTCTC CTAAAGAAGA 
    AGAGGCCATC TATGCACCTG CTCAGGTTGC TGCCCCGGCT GCTCTCGTAG 
    CAGATGCACC ACTCACAGCC GTAGATTACC CTGCGATGAT CCCAGTCGCC 
    TAAAAGAATC CTTTGTACTA GTCGATGTGA TTTTGTTTTC AACTGTTCTT 
    GCTCTTTTGA CAGATTATAG CTTCTCGTAT CTTCGAATCA GACACGTTTC 
    CTCTGTTCTT ATTCGAAAAT TATCTCAAGT TTCCATTGTG GAAAAAAAAA 
    AAAAAAA

    Gene models with high sequence identity

    1. AT3G53870.1 [+] show detail - Ribosomal protein S3 family protein
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan K Homology, type 2 11.052
    superfamily Ribosomal protein S3, C-terminal 2.3e-28
    superfamily K Homology, prokaryotic type 2.5e-16
    HMMTigr Ribosomal protein S3, eukaryotic/archaeal 4.3e-98
    HMMPfam Ribosomal protein S3, C-terminal 2.5e-17
    HMMPfam K Homology, type 2 3.8e-09
    Gene3D Ribosomal protein S3, C-terminal 2.8e-19
    HMMPanther 40S RIBOSOMAL PROTEIN S3 6e-109
    HMMPanther 30S/40S RIBOSOMAL PROTEIN S3 6e-109

    See the detailed result >

    AT3G53870.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S3 family protein
    Computational Description
    Ribosomal protein S3 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: response to salt stress, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, membrane; EXPRESSED IN: root, leaf; CONTAINS InterPro DOMAIN/s: K Homology, prokaryotic type (InterPro:IPR009019), K Homology, type 2 (InterPro:IPR004044), K Homology (InterPro:IPR004087), Ribosomal protein S3, C-terminal (InterPro:IPR001351), Ribosomal protein S3, eukaryotic/archaeal (InterPro:IPR005703); BEST Arabidopsis thaliana protein match is: Ribosomal protein S3 family protein (TAIR:AT2G31610.1); Has 5912 Blast hits to 5911 proteins in 2101 species: Archae - 256; Bacteria - 3650; Metazoa - 372; Fungi - 151; Plants - 167; Viruses - 0; Other Eukaryotes - 1316 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR