F25344

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	increased height (PATO:0000570) (Adult plant::Plant height::tall)
	cauline leaf (PO:0000013)	desaturated green (PATO:0001272) (Cauline leaf::Color::pale) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	desaturated green (PATO:0001272) (Rosette leaf::Color::pale) increased size (PATO:0000586) (Rosette leaf::Shape::large)
	stem (PO:0009047)	desaturated green (PATO:0001272) (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25344

Determination of introduced cDNA(s)

RAFL04-10-J03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-10-J03 - Resource: pda00492

full reading [+] show sequence

AAAAGGTCTT CTTCGGAAGC AAGCTAAGTC ATGGCAACGA TTTCGTCAAC 
TCTACTCTTA AATTCTTCTA GATCAGCTTT ACCACTAAGA TTCCCAAAAT 
TCTCGGGATT TTCTTCTTCC TCTCCATTCG CTAGATCTTA CAGATTTGGA 
CGACGTAATC TGGAACCACT TTCCAACGGA ATGCTTTCGT CGGGAAGTAG 
AGCCGACGGT GCTACGGCGG CGGCTGCATC GATGGAAGGA GTGATGACGG 
AGGCGATGAA ACTGATTCAA TCGGCGTCAC CAACTTGGAA ATCAGCTGTG 
GCTAACAATT TATTGATTTT TGTTCTCGGT TCACCGCTTC TTGTTACCGG 
ATTGTCCGCT TCTGGGATCG CCGCCGCGTT TTTGCTTGGT ACTTTAACTT 
GGAGAGCTTA TGGCTCTGCT GGTTTCCTCT TAGTCGCTGC TTACTTCGTC 
ATAGGAACAG CGGCAACGAA GGTTAAAATG ACGCAAAAGG AAGCACAAGG 
TGTGGCCGAA AAGAGAAAGG GTAGAAGAGG ACCACGCAGT GTGATTGGTT 
CAAGTGCTGC TGGTTGTGTC TGTGCTTTTC TTTCAATATA TCAAGTGGGA 
GGAGCAGCTT TTTCCCAGCT TTTCCGGCTT GGTTTTGTTT CCAGTTTCTG 
CACTAAAGTA TCTGACACTG TCTCGAGCGA GATAGGCAAA GCTTATGGAA 
AAACAACGTA TTTAGCTACG ACATTTAAGA TTGTACCAAG AGGAACAGAG 
GGAGCTATGA GTCTTGAAGG AACATTGGCT GGACTTTTAG CATCATTTTT 
TCTTGCATCT GTTGGCTGCT TCCTGGGTCA GATAACTCCT CCAGAAGCAG 
CTGTATGTGT ACTAGCTTCC CAGATTGCCA ATCTTGGAGA GAGCATAATA 
GGTGCTTCTT TTCAAGACAA AGAAGGATTC AAATGGCTAA ACAATGATGT 
AGTCAACGTG ATCAACATAA GCTTGGGAAG CATTGTGGCG ATTTTGATGC 
AACAGTTTAT ACTCCAGAAC TGGGTCAAGT AAAACCTGCC ACGAAGGTCA 
TGTATTCTCA GTGAGGTTAG ATTCTTTTTT TATATTGTTA AACACAGCCT 
TACGTATTCA GTGGTGTTAT AAATTATACT CTGTTGTGTA CAACTAGTAG 
TCCAACATCA ATGAGGGGAA AAAACTTCTG GGACCATTGT CTAGCAATTA 
TTGGATGATA TTTATGTGAA AAAAAAAAAA AAAA

Gene models with high sequence identity

AT1G78620.1 [+] show detail - Protein of unknown function DUF92, transmembrane
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	Protein of unknown function DUF92, transmembrane	1.9e-127
HMMPfam	Protein of unknown function DUF92, transmembrane	3.9e-64

See the detailed result >

AT1G78620.1

Model type: Protein coding
Short Description: Protein of unknown function DUF92, transmembrane
Computational Description: Protein of unknown function DUF92, transmembrane; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 865 Blast hits to 865 proteins in 301 species: Archae - 133; Bacteria - 238; Metazoa - 78; Fungi - 68; Plants - 85; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).
Link: InterPro Scan - TAIR