F25344

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25344

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25344

Determination of introduced cDNA(s)

  • RAFL04-10-J03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-10-J03 - Resource: pda00492

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-10-J03 - full reading
    AAAAGGTCTT CTTCGGAAGC AAGCTAAGTC ATGGCAACGA TTTCGTCAAC 
    TCTACTCTTA AATTCTTCTA GATCAGCTTT ACCACTAAGA TTCCCAAAAT
    TCTCGGGATT TTCTTCTTCC TCTCCATTCG CTAGATCTTA CAGATTTGGA
    CGACGTAATC TGGAACCACT TTCCAACGGA ATGCTTTCGT CGGGAAGTAG
    AGCCGACGGT GCTACGGCGG CGGCTGCATC GATGGAAGGA GTGATGACGG
    AGGCGATGAA ACTGATTCAA TCGGCGTCAC CAACTTGGAA ATCAGCTGTG
    GCTAACAATT TATTGATTTT TGTTCTCGGT TCACCGCTTC TTGTTACCGG
    ATTGTCCGCT TCTGGGATCG CCGCCGCGTT TTTGCTTGGT ACTTTAACTT
    GGAGAGCTTA TGGCTCTGCT GGTTTCCTCT TAGTCGCTGC TTACTTCGTC
    ATAGGAACAG CGGCAACGAA GGTTAAAATG ACGCAAAAGG AAGCACAAGG
    TGTGGCCGAA AAGAGAAAGG GTAGAAGAGG ACCACGCAGT GTGATTGGTT
    CAAGTGCTGC TGGTTGTGTC TGTGCTTTTC TTTCAATATA TCAAGTGGGA
    GGAGCAGCTT TTTCCCAGCT TTTCCGGCTT GGTTTTGTTT CCAGTTTCTG
    CACTAAAGTA TCTGACACTG TCTCGAGCGA GATAGGCAAA GCTTATGGAA
    AAACAACGTA TTTAGCTACG ACATTTAAGA TTGTACCAAG AGGAACAGAG
    GGAGCTATGA GTCTTGAAGG AACATTGGCT GGACTTTTAG CATCATTTTT
    TCTTGCATCT GTTGGCTGCT TCCTGGGTCA GATAACTCCT CCAGAAGCAG
    CTGTATGTGT ACTAGCTTCC CAGATTGCCA ATCTTGGAGA GAGCATAATA
    GGTGCTTCTT TTCAAGACAA AGAAGGATTC AAATGGCTAA ACAATGATGT
    AGTCAACGTG ATCAACATAA GCTTGGGAAG CATTGTGGCG ATTTTGATGC
    AACAGTTTAT ACTCCAGAAC TGGGTCAAGT AAAACCTGCC ACGAAGGTCA
    TGTATTCTCA GTGAGGTTAG ATTCTTTTTT TATATTGTTA AACACAGCCT
    TACGTATTCA GTGGTGTTAT AAATTATACT CTGTTGTGTA CAACTAGTAG
    TCCAACATCA ATGAGGGGAA AAAACTTCTG GGACCATTGT CTAGCAATTA
    TTGGATGATA TTTATGTGAA AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT1G78620.1 [+] show detail - Protein of unknown function DUF92, transmembrane
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Protein of unknown function DUF92, transmembrane 1.9e-127
    HMMPfam Protein of unknown function DUF92, transmembrane 3.9e-64

    See the detailed result >

    AT1G78620.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function DUF92, transmembrane
    Computational Description
    Protein of unknown function DUF92, transmembrane; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 865 Blast hits to 865 proteins in 301 species: Archae - 133; Bacteria - 238; Metazoa - 78; Fungi - 68; Plants - 85; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR