F25410

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25410

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25410

Determination of introduced cDNA(s)

  • RAFL09-86-D14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-86-D14 - Resource: pda08949

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-86-D14 - full reading 
    ACAACTCACC TCAAACAGAC AATTTAATTC CAAAAGATAA AAACAATCAA 
    AAGATGAATG CCACAAAGTT TGTTGTGCTT CTCGTGATTG GCATTTTGTG 
    TGCCATTGTC ACCGCAAGGC AGGTCGAAGA AGTGTCCAAA GAGACCAAAT 
    TAGGCACCTC TCTTCCAAAA TCTACTAACA AAGGCATTGG AGCTCAGCTT 
    TCTGCTGCTG GTCTTACTTA CAGCGGCAGC AGTGTCTCTA GCTCTGCTAG 
    TGCTTTTAAC AATCCCAAAG GTCCAGGGGC CAGTGCATCC GAAAGTGGCT 
    ACACAAGTAC CATCGGACAA GTCATTGCCA AGGGTCGCAA GGCAAGAGTT 
    TCTTCTGCAA GTGCTTCTGC CGCTACAGGT GAGGCTGCAG CTGCAGTGAC 
    TCGCAAAGCT GCTGCTGCAC GTGCAAAGGG TAAGGTAGCT TCCGCATCAA 
    GGGTGAAGGG TTCCTCTGAG AAGAAGAAGA AGGACCACAA AGGAAAAAAG 
    GATTGAGCGT GAGGTCATCT CATATTCTCA TGCATGCGAA TTCCTCAAAC 
    CTATATATAA ATAATATCCT AAAAACTACA AACTCAAAAT CTCTATCTTG 
    TTCATAAATA AAACCAGAGA TTGTCACCTC TATATATTAT TGTGAAATGC 
    TACTCATTCT CATGTAATGG CTTTTTTAAA AATAAAATAA ATGCAATAAA 
    TCTTATACC

    Gene models with high sequence identity

    1. AT1G62060.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G62060.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62220.1); Has 386 Blast hits to 125 proteins in 33 species: Archae - 6; Bacteria - 295; Metazoa - 8; Fungi - 17; Plants - 46; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR