F25416

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25416

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25416

Determination of introduced cDNA(s)

  • RAFL06-11-C05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-11-C05 - Resource: pda03064

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-11-C05 - full reading
    ATCGTCAGCC ATGGATACTC TCTCAGCATC CGTTTCATCC TTGAACCTCC 
    CTTCTCTTCC TCCACCACCG CAGCCACCGT TGAGATCCAT CTCCAGCCGC
    TTTAAATCCA CCGTAAACGC CACCACTTCT GCTTCATCTA CCAATCTTTC
    AAAACCAACA TCGTCTTCAC CTTCTTCAGC ATCATACTCA CAGAACAGAA
    ACCCTAATTT CCTCAAAGCA ATCTCGTTTC ATCTTCCGCA AACGAAACCC
    TCGAGAGTTG TTACTCCTCC TCCTCCTCCG GTGCATGATA AAGCGGCCTC
    AGGGTTTGCT GCGGCGCTCG TTAGCGTTTG TCAATCGAAG AATTGTCTTG
    GTCGGACTCA AGAAGATGTC AGAAGATTGA TGGAGTTTCT TGTGGGAGAA
    GAAAAGAAGA GGAACAAGGT CTTAGTCAAT GATGTTGTTG AGAGAGGTAA
    ATTTGGTAAA CACTTCAAGG GCTTGGTCAA GATGTTGATT GCAAGAGGTA
    AATCTGGGAT TCTGGTGGAT GTTTTAATGG AATTTGAGAG AATCTGTAAT
    GAATTGGTCT CAAAAAAACT TGTCTGGGTT TCTTGATGAT ACAAAAGATT
    ATATCTAATC CAAAGTTTGC TTCTTT

    Gene models with high sequence identity

    1. AT4G00895.1 [+] show detail - ATPase, F1 complex, OSCP/delta subunit protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G00895.1

    Model type
    Protein coding
    Short Description
    ATPase, F1 complex, OSCP/delta subunit protein
    Computational Description
    ATPase, F1 complex, OSCP/delta subunit protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: proton-transporting ATP synthase complex, catalytic core F(1), plasma membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); Has 48 Blast hits to 48 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 13; Plants - 26; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR