F25417

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25417

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25417

Determination of introduced cDNA(s)

  • RAFL06-09-F16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-09-F16 - Resource: pda02936

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-09-F16 - full reading 
    ACAAACCGCA AACGCGACAG AACTAACTAA CGACGCCGGA GATGGCCGCC 
    ACTTCAACCG CCGCTGCTGC TTCTTCAATC ATGGGTACCC GGGTGGTTTC 
    CGACATTAGC TCCAATTCAA GCCGGTTCAC AGCCCGGTTC GGATTCGGAA 
    CCAAGAAAGC ATCTCCCAAA AAGGCTAAGA CGGTTATCTC AGACCGGCCT 
    CTATGGTTCC CAGGCGCAAA ATCACCCGAA TATCTCGACG GTTCACTTGT 
    CGGGGACTAC GGGTTCGATC CTTTTGGTTT AGGCAAACCG GCGGAGTATC 
    TCCAATTCGA TTTGGATTCC TTGGACCAGA ACTTAGCCAA GAACTTATAC 
    GGAGAAGTGA TCGGGACTCG TACCGAGGCG GTGGACCCCA AATCGACGCC 
    GTTTCAGCCA TATAGTGAAG TCTTCGGGCT ACAAAGATTC AGAGAATGTG 
    AGCTGATTCA CGGTCGGTGG GCAATGCTCG CCACTCTTGG CGCTATCACC 
    GTCGAATGGC TCACCGGTGT TACTTGGCAA GACGCCGGCA AGGTAGAGCT 
    AGTGGATGGA TCATCTTACT TAGGACAGCC ATTGCCGTTC TCTATCTCGA 
    CATTGATATG GATCGAAGTG TTAGTGATCG GCTACATTGA GTTCCAACGA 
    AACGCTGAAC TGGACTCGGA GAAGCGTTTG TATCCAGGAG GCAAGTTCTT 
    TGACCCGTTA GGACTAGCGT CTGACCCGGT GAAGAAGGCT CAGCTTCAGC 
    TAGCTGAGAT CAAACATGCT CGTTTAGCCA TGGTTGGATT CTTGGGTTTT 
    GCGGTTCAGG CGGCTGCAAC CGGTAAAGGA CCGCTCAACA ACTGGGCGAC 
    TCACCTTAGT GACCCACTTC ACACCACCAT TATCGATACC TTCTCTTCCT 
    CCTGATGTGG TGGCTTTTAG CTTCTACTGG TGTCATGTAA TGATGTGGTG 
    GCTTTTAGCT TCTACTGGTG TCATGTAATG ATGTAACGTC GTTATTTTAA 
    AGAAAATTTG GCACCTTTTG TAT

    Gene models with high sequence identity

    1. AT3G08940.2 [+] show detail - light harvesting complex photosystem II
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Chlorophyll A-B binding protein 3.3e-113
    HMMPfam Chloroa_b-bind 1.2e-48
    superfamily Chlorophyll a-b binding protein 9.7e-60

    See the detailed result >

    AT3G08940.2

    Model type
    Protein coding
    Short Description
    light harvesting complex photosystem II
    Curator Summary
    Lhcb4.2 protein (Lhcb4.2, protein involved in the light harvesting complex of photosystem II
    Computational Description
    light harvesting complex photosystem II (LHCB4.2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT5G01530.1); Has 2312 Blast hits to 2241 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1976; Viruses - 0; Other Eukaryotes - 332 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR