F25421

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25421

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Original: F25421

Determination of introduced cDNA(s)

  • RAFL09-91-F19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-91-F19 - Resource: pda09013

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-91-F19 - full reading 
    ACCGTCCTCA TGGCGTTCCT CGCTCTCCCG CATTTCCTGC ATCTCCGTCT 
    CCGGCGGAAT GATCGGAAAA ACCGATGCAA ATGTTGTTTG TCTTCGGCAA 
    CGAATGAAGG TTCCACGGCG GTTGTGTGGT TTAAACATGA CCTACGTGTT 
    GATGATCATC CTGGCCTCCT CGCTGCGTCT AAGCACAGAG CCGTCATACC 
    TCTCTACGTC CTCGATCGTC GCATTCTATC GAGATACACA ACGGACACTT 
    TAGAGCTAGC TATTATAGCA TTGGAAGATT TGAGAAAAAC CTTGAAGAAG 
    CAAGGATCAA ATCTTATGCT CAGATATGGG AATGCAGAGA ATGTCATTGA 
    AGATCTTGTC AAAGAGGTGC GAGCTCCTTT TGTCTTTGTG GAAGAAGAGG 
    TAGAATACCA TCTGTGTGAG GTTTTAGACG CTGTAAAGAA TAAATTGGAA 
    GGTGTTTCTT TATCTGGAGA ATCACCGAGG ATTGTTGCTT GGCGTACTCC 
    TTTTTACGAG AGCCAAAATT TGACAGATCT ACCACAATCT TGGGAGGAGT 
    TTAAGAAACT GAAGCTGCCT CTCACTTTGC CAGTTCCTGC AGCAAAATTT 
    TCATCTCCAG GAAGTGAATT GCAGTGGGGT TCTGTGCCAA CGCTCGATGA 
    CCTGAAGGAC TATTTGAAGG AAAGCTTATG GGAAATAGAA AATAGTTGGA 
    GGGAAATGGC ACAGGCATCT GCTGAAAGAG TATTAATGGA AAGGCTTGGT 
    AACTTGAAGG AAAGCAGTAT GGAGCCAATT GTTGATGGAA GTTTAGGGAA 
    GAAGGTTGAT AACTCTGTTT TTGTCACAAG TAAAAGAGAT ACTGTTGGAG 
    GTGGAAATGA GGTTGTACTG AATGCTCTAG CAGGATACTT GAGGTACTTG 
    GAGGGTACAA GTCGAGATGA CTGGCAAGAG TACGTGGTTA TTCTTAATTC 
    TGGCGTTATT GTGCTTCCCA GATGCTTCCA TATGAAAGTG GTTATTATGG 
    AATGAATCTG GTATATTTTA TATCTTGTTG AAGAGTGATG GGCGTTGGTT 
    TTGATGTTGA CCAGGGTCCA TGCGAGACTT CGTGATGCCG AGACTAGGCC 
    CGGAGCTTCA TTTTTCAAAC TTTTTGGACC TGTCCTCTGT CTTGGTATCG 
    TATCCAGAAG AAGTGTCCAC TATGAAGCAA TCGAGTATGA AAAAGAAAGG 
    AATGCTGGAT TTATTTCTCC TTTTGGATAT TCAGCTGCCA CAGTGTCTGC 
    TGCAACTGAT GCTGTATGCT CTATGGAGTG GTATTATCTC CTGGCTCTAA 
    GTAGAGAGAG GATTGATGAA AAAAGGCACG CTATAAGGAT TTGGAGATGG 
    AAGGGATATC TTATTCAGTA CACAGTGGTT GGTAATGAAG GGCCTGCCGT 
    TCTTCTTGTG CATGGCTTTG GTGCTTTTCT AGAGCATTAC CGCGATAATG 
    TAGACAACAT CGTAAATAGC AAAAATCGAG TATGGACCAT CACAGTCTTG 
    GGTTTTGGAA AATCAGAGAA GCCAAATATC ATTTACACCG AGCTTTTGTG 
    GGCTGAATTA CTGCGGGATT TCATGGCTGA AGTAGTTGGG GAACCAGCAC 
    ATTGCGTAGG GAATTCAATC GGTGGGTATT TCGTTGCATT AATGGCCTTT 
    CTTTGGCCGG CGTTGGTTAA GTCCGTTGTC CTTGTTAACA GTGCCGGCAA 
    TGTGGTACCT GGATACTCTC CTCTCCCAAT CTCTAGAGAA AGGCGAGTTC 
    CATTTGGTGC ACAATTTGGT TCTCGACTTC TTCTCTTTTT CCTACAACTC 
    AATGTCAAAA AGCTATTAAA GGATTGTTAT CCAGTTAAAC CTGAGAGAGC 
    TGATGACTTT CTTGTCACTG AAATGCTAAG AGCATCTCGA GACCCTGGTG 
    TGGTTATGGT CCTGGAAAGT ATCTTTGGCT TTGATCTTTC GCTTCCTTTG 
    AATTACCTAC TCAAAGGGTT TGAGGAAAAC TCTAGTAATA CAGGGAATGG 
    AAGATCCCAT ATCGGATCCG CAGAAGAAAG TAGCCTTACT GAAGGAGCTT 
    TGTCCAGCGA TGGTGATAAA GAAAGTTAAA GCAGGTCACT GTCCCCACGA 
    TGAAATCTCA GAAGAGGTAA ATCCGATTAT CTGCGAATGG ATAGTGAAGG 
    TCACTAATGA TGATCGAGAA CTAAAAGCCT CATCATCCCA GCAACTTTAC 
    CACAGTAATA AACAAAACTA AGGATTTGGT CATCAGAAAG CAGTTTTTGA 
    AATGGTATAG TTTGGTTGTG TCAACAAGAC ATCGTCATAG ATGTCATCAA 
    TCCAAATTGA AGAAACATGA CCATGTTATA ACTCATTTAA AAGGAACCGT 
    CATTTTTCTT TCTGACTAGT ATATATATTG TTTATTTATC TTTTGAAGAT 
    ATGTACAAGT TTTCGTAAGC CTGAATCCGT AATGTCACTA TTTAATTATT 
    TGGACGTTAT GTCACAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT4G25290.1 [+] show detail - DNA photolyases;DNA photolyases
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily DNA photolyase, N-terminal 1.1e-31
    superfamily alpha/beta-Hydrolases 1.1e-29
    superfamily alpha/beta-Hydrolases 1.1e-08
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 4.7e-22
    Gene3D no description 3.9e-27
    Gene3D no description 0.00018
    HMMPanther HYDROLASE 5.8e-154
    HMMPanther ALPHA/BETA HYDROLASE RELATED 5.8e-154
    HMMPanther HYDROLASE 2e-41
    HMMPanther ALPHA/BETA HYDROLASE RELATED 2e-41
    HMMPanther CRYPTOCHROME 4.7e-18
    HMMPfam DNA photolyase, N-terminal 2.2e-23
    HMMPfam Alpha/beta hydrolase fold-1 3.6e-06

    See the detailed result >

    AT4G25290.1

    Model type
    Protein coding
    Short Description
    DNA photolyases;DNA photolyases
    Computational Description
    DNA photolyases;DNA photolyases; FUNCTIONS IN: DNA photolyase activity; INVOLVED IN: DNA repair; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G36530.1); Has 6717 Blast hits to 6715 proteins in 1229 species: Archae - 120; Bacteria - 4210; Metazoa - 285; Fungi - 40; Plants - 525; Viruses - 0; Other Eukaryotes - 1537 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR