F25439

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25439

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25439

Determination of introduced cDNA(s)

  • RAFL15-29-N04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL15-29-N04 - Resource: pda19220

    full reading [+] show sequence

    Nucleotide sequence: RAFL15-29-N04 - full reading 
    ACGTTTGTTT TCACATTTAA ACGACACTTA AGTGCCCACT GGCCACTTCC 
    ATTGACACCC ATTATTACTC TGTCTGTGTC CTCTCTTTTA AAACCTAATC 
    CTCTGTGAAA CTTTTCCAGT TAAAATCTTT TGCAATGTCT AAAGCAGTTC 
    TATTGGTCGC TCTCTGCTTT TTACCGGCTC TAGCCATCGC GGCTAGACCG 
    AACAAGAACC CTTTCGTCGT GCGAGGCCGT GTCTATTGCG ACACTTGCCT 
    CGCTGGTTTC GAAACTCCAG CCTCTACTTA CATCTCCGGT GCAGTGGTTA 
    GATTGGAATG TAAAGACAGG AGAACAATGG AGTTAACGTA TAGCCACGAG 
    GCGAGAACTG ACTCGACAGG ATCATACAAG ATCTTGGTTA ACGAGGATCA 
    TGATGAGCAG TTCTGTGATG CAATGTTGGT TCGTAGCTCT CAGTTACGGT 
    GTTCCAATGT GTCCCCTGGT CATGACCGTG CCCGTGTGAC TCTCACTCGC 
    TTCAACGGTA TTGCTTCTGA CGACCGTTTT GCTAACAACA TGGGATTTCT 
    AAGGGATGCA GCTATGCCGG GTTGTGCGGA TATCATGAAG CTATACCAAG 
    AAACCGAGGA CTAGTTTCTC TGTTTTGTTA AGTATGTGGT ATTAAAATGT 
    ATTGCAGCTT GTGTTATGTG CATTTTATCT GTGACGGTTT TATTACTAAT 
    CGAAAAAAAT ACATATCGAA AAAAAAAA

    Gene models with high sequence identity

    1. AT4G08685.1 [+] show detail - Pollen Ole e 1 allergen and extensin family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G08685.1

    Model type
    Protein coding
    Short Description
    Pollen Ole e 1 allergen and extensin family protein
    Curator Summary
    Encodes a protein, expressed in leaves, with similarity to pollen allergens.
    Computational Description
    SAH7; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT1G78040.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR