F25508

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25508

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25508

Determination of introduced cDNA(s)

  • RAFL05-21-E09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-21-E09 - Resource: pdz87537

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-21-E09 - 5 prime EST 
    TTTGTTCAGA CGTTTCTTTA TTCTTCTTCC TTCCTTCTTC TCCTTCTTCT 
    TGATCGTGTT CAGAAATCAT ATTCATCACC TCTCTCTCTC TATGTCTCTA 
    TATTTGGATT CTTTATAACA TGTGAGATCG ATCTATTTTT GATCAGAGAC 
    AGAGAGAAGA CTAGAAGAAG CAAAGAATAT TTCAAGAATG ATGAAGATGA 
    ATACAGGAAC ATCGCCGTCG GTCATCGGCG GCGGGACTAG TGGTAATGAG 
    TGGGAGTCTC GACCTGGAGG AATGGTTGTT CAACGTCGGA CAGATCAGAA 
    CTCCGATGTG CCACGTGTCT TTCGTGTTCG GGTTAAATAC GGGTCGGTTT 
    ATCACGAGAT CAACATCAAT TCCCAATCTT CCTTCGGAGA GTTGAAGAAG 
    ATGTTGTCTG ATCAAGTGGG ACTTCACCAT GAAGACATGA AGGTTTTGTA 
    CAAAGACAAA GAGAGAGATT CAAAGATGTT TCTTGATCTT TGTGGAGTTA 
    AAGATCGGTC AAAGCTTGTT GTTAAAGAAG ATCCAATTTC TCAGGAGAAA 
    CGTCTCCTTG CAAAAAGGAA AAACGCCGCC ATTGAAAAAG CTTCTAAATC 
    TATCTCTGAT ATTAGTTTCG AAGTCGACAG ACTCGCCGGA CAGGT

    Gene models with high sequence identity

    1. AT5G07220.1 [+] show detail - BCL-2-associated athanogene 3
      E-value: 0; Score: 100.00

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-21-E09 - 3 prime EST 
    GATAGCTTTT TATTGTAATA GTAAAGAAAA TCCAAATCTT TAGGTATTAC 
    AATGATAGTA ATTGTTGAAA CTCCCCTATT ATTTTTGATT GACCTTAAAA 
    GGGAGTCCAA CCAAAAGATA TTCTAGACAA AGCCTCAAAA AATTGCCAAG 
    ATCAAATCAC AAATCATACA CATCTCAGTT GAGATGAAAA ACAAAACAAA 
    TCACATATGA AACCGGAGAA AAAAAAGACA TATTTATCAT GTATGTATAT 
    ATAGTGTTCA TCTTAATCGA AGAATTCCCA TTTGAATCGC GGAGGGACCG 
    GTTTAACCGT TTCAGCCGCC TTGGCCGTCG ATGCGGAATC AAACATTTCC 
    CATTTTGAAG CTACAACCGC CGGAGTACCT GATGAGGATG ATGCATTGGA 
    ATTCCTAGGC TCCTCCTCCT CTTCCTCCAC AAACGATAAC AAATCGCGTT 
    GCTCAAATCG CGTTTGCGTT TGCGGTTTGT GGCGGACGGA CTTGTTGACT 
    TCAACTTTTT TGGCAGAGTT TTTGACTTTC AAGAGGTCGA GTGCCTCAAC 
    GTACTTCTGA ACTCTTTGCA CCTGCATCTT CCTCATCAAT TTGACATCAC 
    CATCAGCAAT AATAGCATCA AGTCTCAATA ACTGATTCAT CAACATCTCT 
    ATCAGATTCA CAAGACTCTT CTCTTCAACT TTACC

    Gene models with high sequence identity

    1. AT5G07220.1 [+] show detail - BCL-2-associated athanogene 3
      E-value: 0; Score: 99.71

    AT5G07220.1

    Model type
    Protein coding
    Short Description
    BCL-2-associated athanogene 3
    Curator Summary
    A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.
    Computational Description
    BCL-2-associated athanogene 3 (BAG3); INVOLVED IN: regulation of apoptosis, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Apoptosis regulator, Bcl-2 protein, BAG (InterPro:IPR003103), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: BCL-2-associated athanogene 2 (TAIR:AT5G62100.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR