F25517

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25517

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25517

Determination of introduced cDNA(s)

  • RAFL09-46-P19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-46-P19 - Resource: pda08408

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-46-P19 - full reading
    ATATACCAAA AACGAAACTG AGAAAGAAGT TTTATTTATT AATTAATGGC 
    GGAAGAGAAA AGCTACAAGT ACGTGATCAT TGGAGGTGGT GTAGCCGGCG
    GTTACGCGGC GAGAGAGTTT AGTAATCAGG GCCTGAAGCC TGGTGAACTC
    GCAATCATTT CCAAGGAACC AGTGCCTCCT TTTGAGCGTC CTGAACTAAC
    CAAGGTATAT ATTGACCTCG AAGTCAATCC GACCCTTGCA AATATCTATG
    TTTGTGCTGG AACTGGAGAA GCGAAGCAGT ACCCTAACTG GTACAAAGAG
    AAAGGGATTG ATCTAATTGT GGGCACAGAG ATAGTCAAAG CAGATCTTGC
    TTCAAAGACA CTTGTTAGTG ATGATGGCAA AATTTACAAG TACCAAACTT
    TGCTAATTGC AACCGGTTCT ACTAACATAA GATTGTCAGA AATTGGCGTC
    CAAGAAGCAG ATGTTAAGAA TATATTCTAC CTAAGAGAAA TCGAGGATAG
    TGATGAGCTT GCCTTGGCTA TGGAACTATA TGTGCAAAGG GGAAAGGCCG
    TCATCATTGG CGGCGGTTTC TTAGGGCTTG AGATAAGTTC TGCTCTAAGG
    GCTAATAATC ATGAAGTGAC CATGGTTTTT CCAGAACCTT GGCTTGTACA
    CCGGTTTTTC ACCGCTGAGA TAGCTTCATT CTATGAGAGT TACTATGCCA
    ACAAGGGAAT CAAAATCATC AAGGGAACTG TAGCAACTGG ATTTAGCACC
    AACTCAGATG GAGAGGTCAC TGAGGTGAAA CTAGAGGATG GAAGAACCCT
    AGAAGCTAAC ATAGTTGTCG CTGGTGTCGG TGCTAGACCG GCCACCTCAC
    TCTTCAAAGG CCAACTTGAA GAGGAGAAGG GTGGAATAAA GACTGATGGG
    TTCTTCAAAA CAAGTGTGCC TGATGTATAC GCACTTGGAG ATGTAGCCAC
    ATTCCCAATG AAAATGTATG GCGGGACGAG GCGTGTTGAA CACGCCGACA
    ATGCTCGCAA ATCTGCTGCA CAAGCAGTCA AAGCAATCAA AGCGGGTGAA
    GAAGGGAAAA CGATCCCAGA TTACGATTAT CTTCCCTATT TCTACTCTCG
    ATTTTTCAAA CTATCGTGGG AATTCTATGG GGAAAACGTT GGAGAATCTG
    TACTGTTTGG AGATAATGAC CCGAAATCTC CAAAGCCAAA GTTTGGGACG
    TATTGGGTTA AAGATGGGAA AGTAGTAGGA GTGTTCCTAG AAGGAGGTAC
    TCAAGAGGAA CACAAGGCTA TTGCTAAAGT GGCACGAGCA CAACCTTCCG
    TTGAGAGTCT TGACGTGTTA TCCGAGGAAG GCCTTTCTTT CGCCACCAAG
    TTCTATAGCA CCTCTCTTTG AGACATTGGG TCTTGTTTAG TCACATTGAT
    GTAATAATCT CCTTTGTCTT TGATTTCATA TCGAGCCCCT ATTGTATTTC
    GAAAAATAAA TTAAATATAA TAATGCG

    Gene models with high sequence identity

    1. AT3G09940.1 [+] show detail - monodehydroascorbate reductase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily FAD/NAD(P)-binding domain 7.8e-39
    superfamily FAD/NAD(P)-binding domain 2.1e-17
    superfamily FAD/NAD-linked reductase, dimerisation 4.1e-16
    Gene3D no description 6.4e-18
    Gene3D no description 9.1e-37
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 4.2e-18
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 4.2e-18
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 4.2e-18
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 4.2e-18
    FPrintScan PNDRDTASEI 7.3e-16
    FPrintScan PNDRDTASEI 7.3e-16
    FPrintScan PNDRDTASEI 7.3e-16
    FPrintScan PNDRDTASEI 7.3e-16
    HMMPanther MONODEHYDROASCORBATE REDUCTASE (NADH) 1.8e-182
    HMMPanther DISULFIDE OXIDOREDUCTASE 1.8e-182
    HMMPfam FAD-dependent pyridine nucleotide-disulphide oxidoreductase 6.5e-34
    HMMPfam Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region 2.4e-16

    See the detailed result >

    AT3G09940.1

    Model type
    Protein coding
    Short Description
    monodehydroascorbate reductase
    Curator Summary
    Encodes a member of the monodehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.
    Computational Description
    monodehydroascorbate reductase (MDHAR); FUNCTIONS IN: monodehydroascorbate reductase (NADH) activity; INVOLVED IN: response to jasmonic acid stimulus, regulation of symbiosis, encompassing mutualism through parasitism, response to water deprivation, response to salt stress, response to symbiotic fungus; LOCATED IN: cytosol; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: Pyridine nucleotide-disulphide oxidoreductase family protein (TAIR:AT5G03630.1); Has 31567 Blast hits to 31505 proteins in 3041 species: Archae - 687; Bacteria - 24961; Metazoa - 895; Fungi - 665; Plants - 718; Viruses - 0; Other Eukaryotes - 3641 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR