F25517

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25517

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25517

Determination of introduced cDNA(s)

RAFL09-46-P19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-46-P19 - Resource: pda08408

full reading [+] show sequence

ATATACCAAA AACGAAACTG AGAAAGAAGT TTTATTTATT AATTAATGGC 
GGAAGAGAAA AGCTACAAGT ACGTGATCAT TGGAGGTGGT GTAGCCGGCG 
GTTACGCGGC GAGAGAGTTT AGTAATCAGG GCCTGAAGCC TGGTGAACTC 
GCAATCATTT CCAAGGAACC AGTGCCTCCT TTTGAGCGTC CTGAACTAAC 
CAAGGTATAT ATTGACCTCG AAGTCAATCC GACCCTTGCA AATATCTATG 
TTTGTGCTGG AACTGGAGAA GCGAAGCAGT ACCCTAACTG GTACAAAGAG 
AAAGGGATTG ATCTAATTGT GGGCACAGAG ATAGTCAAAG CAGATCTTGC 
TTCAAAGACA CTTGTTAGTG ATGATGGCAA AATTTACAAG TACCAAACTT 
TGCTAATTGC AACCGGTTCT ACTAACATAA GATTGTCAGA AATTGGCGTC 
CAAGAAGCAG ATGTTAAGAA TATATTCTAC CTAAGAGAAA TCGAGGATAG 
TGATGAGCTT GCCTTGGCTA TGGAACTATA TGTGCAAAGG GGAAAGGCCG 
TCATCATTGG CGGCGGTTTC TTAGGGCTTG AGATAAGTTC TGCTCTAAGG 
GCTAATAATC ATGAAGTGAC CATGGTTTTT CCAGAACCTT GGCTTGTACA 
CCGGTTTTTC ACCGCTGAGA TAGCTTCATT CTATGAGAGT TACTATGCCA 
ACAAGGGAAT CAAAATCATC AAGGGAACTG TAGCAACTGG ATTTAGCACC 
AACTCAGATG GAGAGGTCAC TGAGGTGAAA CTAGAGGATG GAAGAACCCT 
AGAAGCTAAC ATAGTTGTCG CTGGTGTCGG TGCTAGACCG GCCACCTCAC 
TCTTCAAAGG CCAACTTGAA GAGGAGAAGG GTGGAATAAA GACTGATGGG 
TTCTTCAAAA CAAGTGTGCC TGATGTATAC GCACTTGGAG ATGTAGCCAC 
ATTCCCAATG AAAATGTATG GCGGGACGAG GCGTGTTGAA CACGCCGACA 
ATGCTCGCAA ATCTGCTGCA CAAGCAGTCA AAGCAATCAA AGCGGGTGAA 
GAAGGGAAAA CGATCCCAGA TTACGATTAT CTTCCCTATT TCTACTCTCG 
ATTTTTCAAA CTATCGTGGG AATTCTATGG GGAAAACGTT GGAGAATCTG 
TACTGTTTGG AGATAATGAC CCGAAATCTC CAAAGCCAAA GTTTGGGACG 
TATTGGGTTA AAGATGGGAA AGTAGTAGGA GTGTTCCTAG AAGGAGGTAC 
TCAAGAGGAA CACAAGGCTA TTGCTAAAGT GGCACGAGCA CAACCTTCCG 
TTGAGAGTCT TGACGTGTTA TCCGAGGAAG GCCTTTCTTT CGCCACCAAG 
TTCTATAGCA CCTCTCTTTG AGACATTGGG TCTTGTTTAG TCACATTGAT 
GTAATAATCT CCTTTGTCTT TGATTTCATA TCGAGCCCCT ATTGTATTTC 
GAAAAATAAA TTAAATATAA TAATGCG

Gene models with high sequence identity

AT3G09940.1 [+] show detail - monodehydroascorbate reductase
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	FAD/NAD(P)-binding domain	7.8e-39
superfamily	FAD/NAD(P)-binding domain	2.1e-17
superfamily	FAD/NAD-linked reductase, dimerisation	4.1e-16
Gene3D	no description	6.4e-18
Gene3D	no description	9.1e-37
FPrintScan	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	4.2e-18
FPrintScan	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	4.2e-18
FPrintScan	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	4.2e-18
FPrintScan	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	4.2e-18
FPrintScan	PNDRDTASEI	7.3e-16
FPrintScan	PNDRDTASEI	7.3e-16
FPrintScan	PNDRDTASEI	7.3e-16
FPrintScan	PNDRDTASEI	7.3e-16
HMMPanther	MONODEHYDROASCORBATE REDUCTASE (NADH)	1.8e-182
HMMPanther	DISULFIDE OXIDOREDUCTASE	1.8e-182
HMMPfam	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	6.5e-34
HMMPfam	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region	2.4e-16

See the detailed result >

AT3G09940.1

Model type: Protein coding
Short Description: monodehydroascorbate reductase
Curator Summary: Encodes a member of the monodehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.
Computational Description: monodehydroascorbate reductase (MDHAR); FUNCTIONS IN: monodehydroascorbate reductase (NADH) activity; INVOLVED IN: response to jasmonic acid stimulus, regulation of symbiosis, encompassing mutualism through parasitism, response to water deprivation, response to salt stress, response to symbiotic fungus; LOCATED IN: cytosol; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: Pyridine nucleotide-disulphide oxidoreductase family protein (TAIR:AT5G03630.1); Has 31567 Blast hits to 31505 proteins in 3041 species: Archae - 687; Bacteria - 24961; Metazoa - 895; Fungi - 665; Plants - 718; Viruses - 0; Other Eukaryotes - 3641 (source: NCBI BLink).
Link: InterPro Scan - TAIR